PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV18367.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 88aa    MW: 10361.6 Da    PI: 9.419
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV18367.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-12652347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT  E +++ da + + ++   +W++ ar +g g+t +++ks+++k+
       KZV18367.1  6 SWTDKENKRFEDALADFDKNspdRWNRLARAVG-GKTVEEVKSHYRKL 52
                     7********************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.876257IPR017884SANT domain
SMARTSM007171.1E-8355IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-5553IPR009057Homeodomain-like
SuperFamilySSF466893.3E-12558IPR009057Homeodomain-like
CDDcd001671.34E-7653No hitNo description
PfamPF002497.3E-9652IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MASNSSWTDK ENKRFEDALA DFDKNSPDRW NRLARAVGGK TVEEVKSHYR KLVEDLDHIE  60
TGKVPLPNYK GYKTMNDQEQ RLKYMKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-26288693RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV18367.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083676.12e-42protein RADIALIS-like 4
SwissprotQ1A1732e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2Z7ABG53e-59A0A2Z7ABG5_9LAMI; Protein RADIALIS-like 4
STRINGXP_009760253.11e-36(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.18e-32RAD-like 6