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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV17704.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | HB-other | ||||||||
Protein Properties | Length: 172aa MW: 19882.2 Da PI: 7.6994 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.6 | 2.4e-19 | 29 | 81 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t++q+++Le+ F+ +++p+ ++r+eL +lgL+ rqVk+WFqN+R++ k KZV17704.1 29 KRRHTQHQIQRLEASFKDCPTPNYRQRRELGLELGLEPRQVKFWFQNKRTQLK 81 5689*********************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.099 | 23 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.52E-18 | 23 | 83 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.6E-16 | 26 | 87 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-17 | 26 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.69E-15 | 29 | 84 | No hit | No description |
Pfam | PF00046 | 7.9E-17 | 29 | 81 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 8.8E-5 | 54 | 63 | IPR000047 | Helix-turn-helix motif |
PRINTS | PR00031 | 8.8E-5 | 63 | 79 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MADEALHQFD DNTNVDRDIN LVDDHQPNKR RHTQHQIQRL EASFKDCPTP NYRQRRELGL 60 ELGLEPRQVK FWFQNKRTQL KTQHGHLQNV ELRAENKRLK QENMSYTAHL ENASCISCGS 120 PLAIRGNSVE EHQIRAENVR LREEIARLSA IASQYIGKPV ADSDNVPHST AL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV17704.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028785613.1 | 2e-52 | LOW QUALITY PROTEIN: homeobox-leucine zipper protein HDG2-like | ||||
Swissprot | A2YR02 | 3e-52 | ROC7_ORYSI; Homeobox-leucine zipper protein ROC7 | ||||
TrEMBL | A0A2K3L2P4 | 8e-52 | A0A2K3L2P4_TRIPR; Homeobox-leucine zipper protein HDG2-like (Fragment) | ||||
TrEMBL | A5C0J7 | 4e-51 | A5C0J7_VITVI; Uncharacterized protein | ||||
STRING | Gorai.005G150100.1 | 1e-51 | (Gossypium raimondii) | ||||
STRING | Pavir.J18262.1.p | 4e-52 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13806 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.3 | 1e-41 | homeodomain GLABROUS 2 |