PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV17701.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | HB-other | ||||||||
Protein Properties | Length: 155aa MW: 18415.7 Da PI: 8.8465 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.1 | 4.2e-20 | 22 | 75 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 kR+++t++q++eLe++F+ ++p+ ++r+ L+ +lgL+ +qVk+WFqN+R++ k KZV17701.1 22 KRRRHTQHQIQELESFFKDWPNPDYRQRRALSLELGLEPQQVKYWFQNKRTQLK 75 899***********************************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.71 | 17 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-14 | 20 | 81 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.01E-18 | 21 | 80 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-17 | 21 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.8E-17 | 22 | 75 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.34E-14 | 22 | 78 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MADKDIYQFD LNLNGEEEVQ PKRRRHTQHQ IQELESFFKD WPNPDYRQRR ALSLELGLEP 60 QQVKYWFQNK RTQLKGQHGH LENMELHAEN ERLKAENTSL MEQIKNVACL SCIDTRNVRH 120 RTTTACRKRA LERRAAQYIG KPLTDSDQFL HSTAL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV17701.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020100432.1 | 4e-34 | homeobox-leucine zipper protein ROC2-like | ||||
Swissprot | Q0J9X2 | 9e-33 | ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2 | ||||
TrEMBL | A0A2K3P3R2 | 4e-33 | A0A2K3P3R2_TRIPR; Homeobox-leucine zipper protein HDG2-like | ||||
STRING | AES88097 | 3e-33 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13806 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 9e-34 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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