PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV17614.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 384aa    MW: 43891.1 Da    PI: 8.7955
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV17614.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021138160223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C+ Cg++F +++ L++H +  H
  KZV17614.1 138 TCQVCGRRFFNNERLVNHFKQiH 160
                 8*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10102.9E-957141IPR029060PIN domain-like
PROSITE profilePS5015711.385137165IPR007087Zinc finger, C2H2
PROSITE patternPS000280139160IPR007087Zinc finger, C2H2
CDDcd061673.89E-15154296No hitNo description
PfamPF019362.4E-10209289IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10102.9E-9222291IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MFSLQKFSHA LGAVEFLKEF RTLVPTLAVC ECCYFSSLSN QNPSSSISPF SSEQRVTQNS  60
VGIFWDLDNK PQRSFSPYEA AISLKKAAQG FGFVKYMFAY ANRHAFNYVP PIVGTQKRER  120
KGLNELETMG VKSNEPLTCQ VCGRRFFNNE RLVNHFKQIH EREQMSRLNQ IESARGKRRI  180
NLVAKYSMKM DKYRNAARDV LTPKIGYGLS EELKRAGFWV RTVSDKPHAA DVELRSHMMD  240
MMDKSKVECL ILVSDDSDFV GILREARMRC LKTVVVGDIS DSALKRNANA AFSWQEIMRG  300
KAKKEAGSVV GKWKDQNVLK RLEWTYDPKT EKNQYFPEVE SECSDFECLS SGECGTLLPK  360
ESDAAWWEWE SRAIDLDVPP SSLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV17614.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552334.10.0uncharacterized protein LOC105170049 isoform X2
RefseqXP_020552335.10.0uncharacterized protein LOC105170049 isoform X2
RefseqXP_020552336.10.0uncharacterized protein LOC105170049 isoform X2
RefseqXP_020552337.10.0uncharacterized protein LOC105170049 isoform X2
TrEMBLA0A2Z7AF710.0A0A2Z7AF71_9LAMI; Nucleic acid binding protein
STRINGXP_009770203.11e-162(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA121251920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-128C2H2 family protein