PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV17100.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HSF
Protein Properties Length: 349aa    MW: 39276.9 Da    PI: 4.8821
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV17100.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1087.4e-34201122103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+y++++d+++++li+w + +nsf+vl++ +f++++Lp yFkhsnfaSFvRQLn+YgFkkv+ ++         weF+ ++F +g++++l++i 
    KZV17100.1  20 FVMKTYQMVSDASTNDLITWGSGNNSFIVLEPLDFSRRILPVYFKHSNFASFVRQLNTYGFKKVDPDR---------WEFASEWFLRGQTQMLSNIV 107
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    KZV17100.1 108 RRKHS 112
                   *9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.6E-4516109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.8E-3418109IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-3118109IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-2720109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-162043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-165870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-167183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEGVGGSNSS SSGGSLTAPF VMKTYQMVSD ASTNDLITWG SGNNSFIVLE PLDFSRRILP  60
VYFKHSNFAS FVRQLNTYGF KKVDPDRWEF ASEWFLRGQT QMLSNIVRRK HSAKIYSCHK  120
TEDGEFSDEK ELAVEIAKLR QEQKFLEEEL ESMTRRLEAT EKRPQQMMAF LYKIVEDPEI  180
LPRMLFEKEK ARSLTFNDSK KRRKLTLYST TSSNSSSGVA IPSSSIKSEE DREGNTFKET  240
TSSSSPGGNL NTEICCQSPT EFELSSPVLL LNRESIGVPA VSQESTNPAC FTSSSMLSSY  300
DENGAFGSVS PPMNNLMEFR NFEGFNGGYF DELLTWENNS DALPHPFSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-221010919129Heat shock factor protein 1
5d5v_B6e-221010919129Heat shock factor protein 1
5d5v_D6e-221010919129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199203KKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV17100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078395.11e-112heat stress transcription factor C-1-like
SwissprotQ9LV522e-81HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A2Z7ADM00.0A0A2Z7ADM0_9LAMI; Heat stress transcription factor C-1
STRINGXP_009770587.11e-97(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-82heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]