PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV16460.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

bHLH

Protein Properties

Length: 412aa MW: 43512.4 Da PI: 6.3587

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV16460.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.1e-12	218	263	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq KZV16460.1 218 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 263 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.22E-13	211	267	No hit	No description
SuperFamily	SSF47459	9.68E-17	211	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.282	213	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-16	215	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-9	218	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-13	219	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MQPTAGELPE MNNLNPLLSS MSTNSHFDPT SSHEDFLDQM FSSVPSSASS FPWPDDHAPP 60 PCHLEDQSTA LLASKLRQQQ ISNGAAKALL LQQQLMLSRG LAVNDLHSPS AVDMGFLNMP 120 HSDQDDVVDG SCYKSANPDH DASIKALFNG FTGSIGHSSN QPQHHLHHQG GALQSQQFGG 180 ASAPEMNQPA ASGTSGGGTP GQPKQRVRAR RGQATDPHSI AERLRRERIA ERMKSLQELV 240 PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV NNPLVADMSS EGGVGRNGNG 300 TQTAASSSNN DGMTVTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHTRS 360 HHPLANNNPL LNGEAAAPTS PSMSALTVQS ATIAANGGGE TSLKDTNSVS KP

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MQPTAGELPE MNNLNPLLSS MSTNSHFDPT SSHEDFLDQM FSSVPSSASS FPWPDDHAPP  60
PCHLEDQSTA LLASKLRQQQ ISNGAAKALL LQQQLMLSRG LAVNDLHSPS AVDMGFLNMP  120
HSDQDDVVDG SCYKSANPDH DASIKALFNG FTGSIGHSSN QPQHHLHHQG GALQSQQFGG  180
ASAPEMNQPA ASGTSGGGTP GQPKQRVRAR RGQATDPHSI AERLRRERIA ERMKSLQELV  240
PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV NNPLVADMSS EGGVGRNGNG  300
TQTAASSSNN DGMTVTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHTRS  360
HHPLANNNPL LNGEAAAPTS PSMSALTVQS ATIAANGGGE TSLKDTNSVS KP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	227	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV16460.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022888150.1	1e-168	transcription factor bHLH66-like
Swissprot	Q9ZUG9	2e-85	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A2Z7ABT3	0.0	A0A2Z7ABT3_9LAMI; Uncharacterized protein
STRING	Migut.K00336.1.p	1e-148	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-67	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]