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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV15896.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | HSF | ||||||||
Protein Properties | Length: 238aa MW: 27033.4 Da PI: 6.5233 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.5 | 2.4e-34 | 26 | 116 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y ++ed++++e+isw+++g++f+v+++ efa+++Lp+ Fkhsnf+SF+RQLn+YgF+kv +++ weF+++ F+kg++++l++i+ KZV15896.1 26 FLVKTYMVVEDPATDEVISWNADGTAFIVWQTAEFARDLLPTLFKHSNFSSFIRQLNTYGFRKVATSR---------WEFSNEMFRKGERDQLCEIR 113 9****************************************************************999.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r++ KZV15896.1 114 RRR 116 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.5E-35 | 22 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.2E-51 | 22 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.76E-31 | 23 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.5E-18 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.6E-31 | 26 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-18 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 65 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-18 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MTEACDNPSD EKGLVEYVPK ASASPFLVKT YMVVEDPATD EVISWNADGT AFIVWQTAEF 60 ARDLLPTLFK HSNFSSFIRQ LNTYGFRKVA TSRWEFSNEM FRKGERDQLC EIRRRRAWSN 120 KPLHNVQHQT APPKPLTDNI SQHQSDEDQR SSSTSSSSDY SSLICENKRL RRENGALNLE 180 LEIAKRKCKQ LLGLAAVCEG INGEKEEEEN GDQGPMLFGV RLMEVQSGVA KKRKVEVI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 2e-21 | 23 | 115 | 1 | 104 | Putative transcription factor |
5d5x_B | 2e-21 | 23 | 115 | 1 | 104 | Putative transcription factor |
5d5x_E | 2e-21 | 23 | 115 | 1 | 104 | Putative transcription factor |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00305 | DAP | Transfer from AT2G41690 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV15896.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022888274.1 | 3e-95 | heat stress transcription factor B-3-like | ||||
Swissprot | O22230 | 6e-67 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | A0A2Z7A332 | 1e-178 | A0A2Z7A332_9LAMI; Heat stress transcription factor B-3 | ||||
STRING | XP_008244246.1 | 5e-89 | (Prunus mume) | ||||
STRING | XP_009617028.1 | 6e-89 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4423 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41690.1 | 3e-59 | heat shock transcription factor B3 |