PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

KZV15478.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 269aa MW: 30075.6 Da PI: 8.8103

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV15478.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	207	229	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k Fs+ L H+r+H KZV15478.1 207 HTCKICFKKFSSGQALGGHQRRH 229 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.26E-7	134	158	No hit	No description
PROSITE profile	PS50157	9.847	136	163	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.039	136	158	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	7.9E-6	136	159	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	138	158	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.26E-7	202	229	No hit	No description
Gene3D	G3DSA:3.30.160.60	0.001	205	232	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	4.3E-8	206	230	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.27	207	229	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.369	207	235	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	209	229	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MAGENLDSTA DLIRALKPWQ GKARRTMRRE VSLPPRVPSS EHQNRSPQAV VISGKRKLEE 60 TDRNGSVEKS KKTDSASVDY PIISSGANHD GESGVSEIQS NSIDEISLGT KSNSSNKRCT 120 DESEDQVTSV VLPKIYACSF CSKTFSSHLA LGGHKSSHNK FQMIIYNAID LRRRKRPSMI 180 TNACHQQPRE DRHIASNPES VGNDRTHTCK ICFKKFSSGQ ALGGHQRRHW TGNMPDQKKT 240 ISAPKILDFD LNELPDEQDE DPSSYFLFF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	176	LRRRKRP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV15478.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2Z6ZY53	0.0	A0A2Z6ZY53_9LAMI; Uncharacterized protein
TrEMBL	A0A2Z7A1I7	0.0	A0A2Z7A1I7_9LAMI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	6e-15	C2H2 family protein