PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

HD-ZIP

Protein Properties

Length: 218aa MW: 24940.2 Da PI: 6.5303

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV14284.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.8	2.1e-19	61	113	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++++ql+ Le+ F+++ +++ +++ +LAk lgL+ rq+ vWFqNrRa++k KZV14284.1 61 KKRLSTDQLDLLENSFQEEIKLDPDRKMKLAKDLGLQPRQIAVWFQNRRARWK 113 55699***********************************************9 PP
2	HD-ZIP_I/II	120.2	1.1e-38	60	151	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kk+rls++q+ lLE+sF+ee kL+p+rK++la++Lglqprq+avWFqnrRAR+k+kqlE y++Lk+++d++++e+++L++ev +Lr++lk+ KZV14284.1 60 KKKRLSTDQLDLLENSFQEEIKLDPDRKMKLAKDLGLQPRQIAVWFQNRRARWKAKQLELLYDSLKQEFDNVSREKHNLQQEVFSLRATLKD 151 9**************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.99E-19	46	117	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.568	55	115	IPR001356	Homeobox domain
SMART	SM00389	6.9E-18	58	119	IPR001356	Homeobox domain
CDD	cd00086	5.35E-17	60	116	No hit	No description
Pfam	PF00046	1.7E-16	61	113	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.6E-20	62	122	IPR009057	Homeodomain-like
PRINTS	PR00031	1.2E-5	86	95	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	90	113	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.2E-5	95	111	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MDWKGNFRVP FVPRVPDPSP FSFLYSYNYD HYPAGLEMKQ QSVPGLMDNK SCNVIGQDPK 60 KKRLSTDQLD LLENSFQEEI KLDPDRKMKL AKDLGLQPRQ IAVWFQNRRA RWKAKQLELL 120 YDSLKQEFDN VSREKHNLQQ EVFSLRATLK DQAAKKQVSK AYTEVSGEET VESTSLPSCD 180 KSGGNGNQIP ECSYALNVDD FNPVMMGAAY WADMPSCS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	115	RRARWKAKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV14284.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094442.1	7e-97	putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	3e-51	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A2Z6ZYE9	1e-162	A0A2Z6ZYE9_9LAMI; Homeobox-leucine zipper protein ATHB-51
STRING	Migut.J00491.1.p	2e-94	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3869	22	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	7e-44	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]