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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV14001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | WRKY | ||||||||
Protein Properties | Length: 258aa MW: 29659.6 Da PI: 8.161 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.1 | 1.8e-28 | 170 | 229 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+YY+C++a C+vkkkv+rs edp+++++tYeg+H h+ KZV14001.1 170 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApICSVKKKVQRSVEDPSLLVVTYEGKHYHH 229 58***************************99***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 24.558 | 165 | 231 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.7E-27 | 165 | 229 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-23 | 169 | 230 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.0E-30 | 170 | 230 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.8E-23 | 171 | 229 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MLNQIDRVER DLASSSYGLL LNFLPLAFER MEKGHLFNGN CLIDLNSNPM QNPDESLNSE 60 FEDNFTGHAR GFSLKDTEEL DRLISENKKL HDMLATLIKN QNDWVQKQCN SGEECSRKRK 120 HDDSNFVEKK CCNQACWEEC WSHGTPKGIK PNASKKVLVR VDPSDMSLVV KDGYQWRKYG 180 QKVTRDNPSP RAYYKCSFAP ICSVKKKVQR SVEDPSLLVV TYEGKHYHHY HHHSSLQSET 240 AGVSLQARFP VTLLRVLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-19 | 169 | 228 | 16 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 5e-19 | 169 | 228 | 16 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV14001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011081961.1 | 2e-57 | probable WRKY transcription factor 40 | ||||
TrEMBL | A0A2Z6ZY60 | 0.0 | A0A2Z6ZY60_9LAMI; Putative WRKY transcription factor 40-like | ||||
STRING | Migut.E01464.1.p | 5e-47 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4500 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.1 | 3e-36 | WRKY DNA-binding protein 18 |