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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ51490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | SBP | ||||||||
Protein Properties | Length: 2162aa MW: 221682 Da PI: 6.7476 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 86.5 | 3.2e-27 | 74 | 148 | 1 | 75 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 +C v++C++dls++k y+rr+++Ce h k+ + +++g+ rfCqqC+rfh l+ef+ +krsCrr L + +rrk KXZ51490.1 74 TCMVKDCDVDLSSCKAYYRRFRICERHLKTLSLCIEGRASRFCQQCGRFHVLEEFEGNKRSCRRALLTRFYKRRK 148 5***************************************************************99887777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.4E-28 | 70 | 136 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 23.769 | 72 | 149 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.96E-25 | 74 | 150 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.6E-24 | 75 | 148 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 2162 aa Download sequence Send to blast |
MDSQAWERGG VEADWLPGDY AWDARRLLVN HQGPDVDVLA LAAGANDGHE ADDRGGAIDT 60 DEPMQPAEEG GSETCMVKDC DVDLSSCKAY YRRFRICERH LKTLSLCIEG RASRFCQQCG 120 RFHVLEEFEG NKRSCRRALL TRFYKRRKLP VPPEALPPPP SDSAPRAAAK DTDPRPKAAR 180 ATASGDPNQP LQRRKRGRPR APPMDVRDLA AGDPEVGAEP TGNALLAQAG QQHQHQPQQG 240 LAQGRQRRGQ ALLASGLQLK QGGLGALGPD SPAPSGGGSS GTHSSGSAGG GDGAAAAAYH 300 RHSSAYPGAP LDIAGLMGPG GAGGAAGAGG AAAGVSNSYI TGLSLGLAEA AGLDLLRPLQ 360 TSVPAGEAAH SLSSARPPAG VGGALAGLAA QWQPQRLEAL QLGLGRQHEA RQLQGLQGQF 420 QPSPLQAVGV SRPHSQDPHH QQQHQQQLLH LERREQDASA LADIEGYLRG AAGGASGGVE 480 GLNRLQRHVM MLRQSSDAAA GPRAAYAASA ASREVAERPE TVFEQSWPAE TWSVNGWQLS 540 GANGGGSGGG ALNTGRAGAL GSGTRGAGGG GGGGGGSGFA AIVDPLELEL LSIASESLLN 600 DQSLRGPGKL SASMLMGLQS RRAQEGSHTQ QLQRMQAQPP YQQHPQQSLQ HQHQQSQQHN 660 QQQQLLQMQQ AQMQQQQQQQ PAFERSSQAS RQSQSQLSPR QLHAQLQELQ SDMRARGFGA 720 QPAGGAAGDG SGGVQLGRAP ADAMQLRPGS AGFPHLLCVK EEEGLSGLGR SASGMVPMET 780 RYAHLEYGPS AGLSASPAVG DAFQIVQMTA GIGGGFSSGG DASSGAATAV GSGSGGVGSG 840 AGGLNSPAVG GGGGASRVGV PTGNYMSARD AVLPQFASAG SAGSGSLQPL SLGQQSDRLQ 900 QQQRQELQHQ HHPQQQQQHA LQQPLRLGAG LGSGMGMGMG PAAEESAGAG GWAGGGYDCQ 960 DFQQQQLHQQ QQRQQRQQLQ QLLLERLQYQ QREQQRELQQ QQQGQHHQQQ QQHYMDGSDM 1020 APKSLAQQHH QQQYLSQHQY APRPELFANN PPAHAPQQHL HHHTQSQPEH ASLREAAQML 1080 LAQGGPRAEY APPATLMERL SLKIHNCRPE QLPRDLAERL ADLLASADAS VLQGFVRPGC 1140 THLLVDLLYG DRERLVSALL ALDADQRVAA ERIARGLLER RDGGEPWQRL HLQIGDMLLT 1200 LHDGDARLRQ RAALPAATAQ HGGRSRTGSL DSWCAPELVG IAPIAVVAAG KVQQRRQKGL 1260 WRRRAVVVVA AAAVAGGEGS NDREWGSNEV LSLRTTTPTS LAAAVTAVGG GAASAGRSGG 1320 GGGRLGREAG SGLFLSAADS EEDSDGDGGA WAVTAAGGAG DGMAAPAAVT TAMAQPPRQR 1380 GAAAVSERAL SAAAAPVAPQ HFPTAAGQQG GSASASGPAS GSAPGSARRR RLALWTPSGR 1440 PVDAVACFST ETYFSDISDG EDTDRPSQVS QSSEHLSFEG SDPDVVVLFV QPAPRPGLAI 1500 VEAESPAQRA ELTGGAGGGV PYSGAQAPAA SAGSRLSARA GGSSVVAGGV LSEWWPVVVV 1560 PESAAAAAGE LNGLLDEDCN EAWLRAMLVD FGLVLEALDP DSDPELELLL SASTGHAATT 1620 TAAAPGDPGP PPPGDRCLLT AAAASVAAAG SPSAAAQFGM GNPPLAALLA GRGSDDSVAP 1680 PSPMSTGALD ERCATAANNG LTASSSGGTG WEPRVALALA IQPLSLSDPC HKGGRMLSSA 1740 AALEAAPGDA EAILTGLPEL AAVALPPPPP RGAVGPRSSC DPIPLDTTPG APGGASQHLI 1800 DLSSGEAAHF FGFRGIGPDS DPVEPVALGS PRLASPLPRP PLASSPPPAT AARKVTTAAA 1860 GDAARAGDAA ATVAAAASAA ALAAGLLREA DAGNSAHYRA GHALPQTHSQ TAQWGPPEEA 1920 GRGDSAQERG RGPRLQHWWG SPSELAAVDA TTAPPPPPPA VRYIGEATAA AANAASAELR 1980 SAAPGPRPGR EHGAVAMWRL EQRRQLGPRA RSLLVFFLNR GLHQCAALAL ASLLRTAGAA 2040 PAIADAVAAA PTSLPASPLA TSGPAAAGDA TTAASAAAAP AAAPQPLLVL DPAALRSVAL 2100 AFATSAEAVR AESGMGLLHH AVRSGCPDAV RWLLRASRLA GAPFDVMEPG ERRFPVGSSR 2160 KW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 3e-17 | 70 | 151 | 1 | 82 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 148 | KRSCRRALLTRFYKRRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A150GQ70 | 0.0 | A0A150GQ70_GONPE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-18 | SBP family protein |