PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ48867.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family C2H2
Protein Properties Length: 510aa    MW: 53047.3 Da    PI: 8.886
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ48867.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019480501223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 +C+ Cg+  ++  +Lk+Hi ++
  KXZ48867.1 480 QCHGCGRKAKNLPELKSHIISC 501
                 8******************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.3008.6E-145121IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF136715.0E-115123No hitNo description
SuperFamilySSF525405.69E-95123IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS510848.742325433IPR011146HIT-like domain
SuperFamilySSF541976.34E-37331486IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.108.5E-16332432IPR011146HIT-like domain
PfamPF119698.0E-27333438No hitNo description
PfamPF162782.1E-11444500IPR032566Aprataxin, C2HE/C2H2/C2HC zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006790Biological Processsulfur compound metabolic process
GO:0009150Biological Processpurine ribonucleotide metabolic process
GO:0090305Biological Processnucleic acid phosphodiester bond hydrolysis
GO:0047627Molecular Functionadenylylsulfatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MDPIGKTTFA RELLQKSPVA WEHISQDAIQ GGRPGKREQC IAAACAALDQ GSCVVIDRCH  60
SDEAQRSSFL ALGAQRGVAV HCVALTLPVA QCASRVAGRT DHPGGVQGDS SKAVVYRMAK  120
QRESGAAWPP PLAEGFVSVM DCRGDADAAV ALRAWAAYGS GVAPPQQPAA AGAAATSGVA  180
AALVTAAPSG GGCTGLTPEA RPDTQAAQAA AAATLAIWET YAQKRKAAPA GITAFFKPAA  240
PAAGSAGKGG TQEDGSGTQK GGRNAFALMM SSASRQGAVD RSGGSAGGSR TAAAGGGGRA  300
PAAAAGADQD SRFKLSAAWA QALRKTALDP DSQTDQVVLL KDDKVVLMMD AFPKARHHAL  360
VVARDPALRS IANLTREHIP LLRHMRAVGL DWVQQCRTQD PATVAFKIGF HAVPSMCQLH  420
MHVVSQDFDS ACLKKKKHWN SFATRFFLPH EAVEKELEQN GRLALMSAAE ERQLEEAELQ  480
CHGCGRKAKN LPELKSHIIS CAAVKGLPGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ndf_A3e-383194987176Aprataxin
4ndf_B3e-383194987176Aprataxin
4ndg_A3e-383194987176Aprataxin
4ndg_B3e-383194987176Aprataxin
4ndh_A3e-383194987176Aprataxin
4ndh_B3e-383194987176Aprataxin
6cvo_A3e-383194987176Aprataxin
6cvo_B3e-383194987176Aprataxin
6cvs_A4e-383194987176Aprataxin
6cvs_B4e-383194987176Aprataxin
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002947447.12e-91hypothetical protein VOLCADRAFT_120448
TrEMBLA0A150GGA10.0A0A150GGA1_GONPE; Uncharacterized protein
STRINGXP_002947447.17e-91(Volvox carteri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.18e-35APRATAXIN-like