PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ46408.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family AP2
Protein Properties Length: 853aa    MW: 84578.2 Da    PI: 8.3274
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ46408.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.63.5e-14580631155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+++GV++++++grW+A+I++    + + ++++lg +  +e Aa+a++ a++k +g
  KXZ46408.1 580 SQFRGVTRHRRSGRWEAHIWV----KeIGRQVYLGGYEEEEHAAEAYDVAALKCKG 631
                 789******************....4345**********************99876 PP
2AP231.83.6e-10675724155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV+ ++ +grW+++I  p   g +k+++lg f  + +Aa+a+++   +l+g
  KXZ46408.1 675 STYRGVTAHP-SGRWESRIGIP---G-SKHIYLGLFEHERDAAAAYDRSLVRLRG 724
                 56********.7*********8...3.6**********99********9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-12580641IPR016177DNA-binding domain
CDDcd000181.26E-13580640No hitNo description
PROSITE profilePS5103217.688581640IPR001471AP2/ERF domain
SMARTSM003806.1E-27581646IPR001471AP2/ERF domain
PfamPF008473.8E-9581631IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-16581641IPR001471AP2/ERF domain
CDDcd000181.00E-13675731No hitNo description
SuperFamilySSF541711.24E-13675733IPR016177DNA-binding domain
SMARTSM003802.9E-19676738IPR001471AP2/ERF domain
PROSITE profilePS5103215676732IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-15676733IPR001471AP2/ERF domain
PRINTSPR003671.4E-5677688IPR001471AP2/ERF domain
PRINTSPR003671.4E-5714734IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MAARTFSAQL DALFLETLAS PAHPSAAGGG GGSSGADGSG RRTPEVARYG SGTMQALAET  60
LLGPHDGGVG GGVHRLYSLG SLEIRSVEQL LWGGGGGGPT SSGFALSPVS VRPPLRSDSI  120
STYHQLAGEG AGAGSPAGKD ATATDGSAAA GPVQAFCGSP SAERARDHAG EGGALVVAAA  180
VHPAAAHAPH GGGAPSHYSS VPPPATFGYP SDGGRRAAGG SGGGGHTGVD VAAGAAIARR  240
SSSGALPVYP QPPHASTLVS PSQQQQQQPS AAGGSSPHAE PAARRERQTS AVSDCSVALR  300
ELLFAGSGGN GGHGGTDGDA ADAAYGNAMY NSITDMRGAM AALLHDDALD DIPLTYLQRG  360
GSTAAAAAAA AFGGTGLLFP PAAANSSLPG AGSAACMGSA EGMLASLQAQ QQPQSQGLWD  420
HSGAAAAVDQ GGFNVAKGGG RRSTGGAARA KPRPRRGAGA GGAAGGNHAT AAAVVAEGRV  480
LDDALAAAAA AVAAVPLPAP PRARAPKRTA AVAALQQITR ASSRSSESGR SYSAGSASMG  540
GGGGGGARGG VRGGAGPGGD ADADYEVVEE EDPADKKRSS QFRGVTRHRR SGRWEAHIWV  600
KEIGRQVYLG GYEEEEHAAE AYDVAALKCK GSKGTRTNFP LTRYSGLLPS LPTISLEELI  660
MAVRRQSQGF SRGSSTYRGV TAHPSGRWES RIGIPGSKHI YLGLFEHERD AAAAYDRSLV  720
RLRGSAAATN FSLSEYRAEL AEYHTYQQAA VLRDERMASV TRAGPDFEKW IKSGFKAFPH  780
LASAPVAAAG EEAAAREFEM RDGSGGGGGG GGGGGAVSAG GAAAAASTAS PIAAVMAMAA  840
AAANGAMAAA LAM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002953244.11e-119pathogenesis-related genes transcriptional activator
TrEMBLA0A150G9950.0A0A150G995_GONPE; Uncharacterized protein
STRINGXP_002953244.11e-118(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.33e-31related to AP2.7