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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ44968.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | ERF | ||||||||
Protein Properties | Length: 98aa MW: 11051.3 Da PI: 8.9362 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.9 | 6.9e-15 | 48 | 98 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV+w+k+r +W+ ++r+ k+ + g+f+t eAa a++aa++k +g+ KXZ44968.1 48 SSYRGVSWNKNRSKWETQLREL-----GKNLYFGRFDTQLEAALAYDAAARKHHGA 98 67****************9993.....4************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-9 | 48 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-11 | 48 | 97 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 12.576 | 49 | 98 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0023 | 49 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-10 | 49 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MLYKRDGEAA VFNFGLSDAQ RAELDAMSME DLLASFRSHG ERFASGASSY RGVSWNKNRS 60 KWETQLRELG KNLYFGRFDT QLEAALAYDA AARKHHGA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002949573.1 | 1e-18 | hypothetical protein VOLCADRAFT_89954 | ||||
TrEMBL | A0A150G563 | 2e-64 | A0A150G563_GONPE; Uncharacterized protein | ||||
STRING | XP_002949573.1 | 4e-18 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP10509 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 6e-09 | AP2 family protein |