PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ44260.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family MYB_related
Protein Properties Length: 814aa    MW: 90002.3 Da    PI: 8.5167
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ44260.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.2e-103880247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       WT eEde+l+++ k+++   W+tIa  +g  Rt+ qc +r+  +
       KXZ44260.1 38 TEWTREEDEKLLHLAKLMPCQ-WRTIAPIVG--RTPAQCLDRYERL 80
                     68*****************88.********8..*********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.9133IPR001005SANT/Myb domain
CDDcd001671.62E-6231No hitNo description
Gene3DG3DSA:1.10.10.602.5E-12238IPR009057Homeodomain-like
SuperFamilySSF466893.14E-201185IPR009057Homeodomain-like
PROSITE profilePS5129420.3563285IPR017930Myb domain
CDDcd116597.75E-313385No hitNo description
SMARTSM007178.6E-123683IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-143983IPR009057Homeodomain-like
PfamPF139216.8E-94091No hitNo description
PfamPF118312.0E-41423659IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MKYGLNQWAR ISSLLVRKSA KQCKARWYEW LDPSIKKTEW TREEDEKLLH LAKLMPCQWR  60
TIAPIVGRTP AQCLDRYERL LDQAVAKDVN YDPRDDPRRL RPGEIDPNPE SKPARPDAVD  120
MDEDEKEMLS EARARLANTR GKKAKRKARE KQLEEARRLA MLQKKRELKA AGIETRGKFK  180
NARAIDYNAE VPFELKPQAG FYNTEEEDQV TRSMQQEFRP VTVEELEGRR RKDIEEALIK  240
KDVKRQKLNE LHDAPGAVAQ SMGLDNAAQR RRGKLMLPAP QVSEAELEQI ARLGVDGALE  300
ASVQEGAGGD ATRTLLGQYN QTPRLGPGAT PMRTPRTGPG AGGGDRIMAE AAALARLQGM  360
GTVLEGGETG VNVAQMDFAG VTPRNVVAAT PNPLAGMATP SVRGGAGGAA GGMTGTRVVP  420
AIAATPSVAG TPLRGSGGGG LPGATPMLPH IRDELGLNET DVLTAALEGG SKRVVAARQA  480
AVRGELRERL AGLPAPQNEY AFEPVEVPQD EPEEAMEEDL ADVRVRKARE EEERRRLEEL  540
KKSKALQRQL PRPLTVDNLP APRPAPAGPS ADPAALRERA EELVAAEMVT LLMHDAIKYP  600
VKDARSETKK KGDKGSSKQA GPAPSLDELP LEELKAAEEL VKQEVTFLRH AWDHAKLSQD  660
DYIDVWMAVH RDLIYLPARQ RYERAASATN VDRIESIKSE FEHVRTSMER EAKKAAKLEG  720
KLGLLLGGLQ KRHGELEGRT AELWAQVRDA AQELMCFKAL HERELRAAPE RLEALGELLS  780
AAQRRESELQ DRYKTLLRRK EELTRALAQG QAQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.0180324798Cell division cycle 5-like protein
5xjc_L0.0180324798Cell division cycle 5-like protein
5yzg_L0.0180324798Cell division cycle 5-like protein
5z56_L0.0180324798Cell division cycle 5-like protein
5z57_L0.0180324798Cell division cycle 5-like protein
5z58_L0.0180324798Cell division cycle 5-like protein
6ff4_L0.0180324798Cell division cycle 5-like protein
6ff7_L0.0180324798Cell division cycle 5-like protein
6icz_L0.0180324798Cell division cycle 5-like protein
6id0_L0.0180324798Cell division cycle 5-like protein
6id1_L0.0180324798Cell division cycle 5-like protein
6qdv_O0.0180324798Cell division cycle 5-like protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002956078.10.0hypothetical protein VOLCADRAFT_107065
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A150G4M80.0A0A150G4M8_GONPE; Uncharacterized protein
STRINGXP_002956078.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP10401617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-158cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]