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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ41798.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | MYB_related | ||||||||
Protein Properties | Length: 219aa MW: 23232.8 Da PI: 6.965 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.9 | 7.4e-16 | 43 | 86 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ W+++E+ lv a++ lG++ W+ Iar++g gR+++ +k++w++ KXZ41798.1 43 KQTWSEQEEWALVAAHAALGNR-WADIARRVG-GRSENAVKNHWNT 86 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.157 | 1 | 35 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 5.74E-22 | 17 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00521 | 17 | 35 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.9E-7 | 18 | 37 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 38 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.805 | 38 | 92 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-12 | 42 | 90 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-14 | 43 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.58E-10 | 45 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MVHIAGGGGG GAAAGEQLLG GRTPKQCRDR WMHYLKPDVI TTKQTWSEQE EWALVAAHAA 60 LGNRWADIAR RVGGRSENAV KNHWNTGLRR KLPTRYADMR ISVLDRYQAL RGFKKFPPPE 120 EAEVLAAATS GPPLPTPSGG DARAGGRRGG DGAQAGKKRK AESQNEQAQQ VPEQGPPQAD 180 GRGGAGDSLE AAEAAEDATA VSAGASEEEA EAYMMDFFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-21 | 19 | 94 | 37 | 110 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A150FW52 | 1e-156 | A0A150FW52_GONPE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 5e-24 | myb domain protein 98 |