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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ41653.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 26093.4 Da PI: 9.7839 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.4 | 1.2e-13 | 7 | 54 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+++N++f+ L +l+ ++ + +K +K++iL+ A++Y++++ KXZ41653.1 7 KKACREKARREKLNERFADLARLIDPN---GEPKTDKSTILTDAIKYVQQM 54 5678***********************...*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.618 | 3 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.9E-14 | 6 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.10E-10 | 6 | 59 | No hit | No description |
Pfam | PF00010 | 3.2E-11 | 7 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-14 | 8 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-11 | 9 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MSAAATKKAC REKARREKLN ERFADLARLI DPNGEPKTDK STILTDAIKY VQQMTVENHQ 60 LRQLNKFLEE RVSTLERERG QQLYQQSLMM TQMGGGQLMQ AGQAMMVGGP AGMMGGAMQG 120 PAMAHPVAMQ ASAAMASSSG ALMSAAPLPA APTPPLPTLH SQPHQQQTVA AGMVTPAQGG 180 MMMQMPGAVS GMGTAGLGVT VNVAAGAGPS KPIMVNAMPG AMPYQGMYWL PPQMMDSTQD 240 SLLRPPAA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00372 | DAP | Transfer from AT3G23210 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011396941.1 | 8e-33 | Transcription factor | ||||
TrEMBL | A0A150FVK4 | 1e-176 | A0A150FVK4_GONPE; Uncharacterized protein | ||||
STRING | A0A087SEA6 | 3e-32 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5649 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23210.1 | 2e-11 | bHLH family protein |