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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN545330.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 78aa MW: 8840.17 Da PI: 10.7586 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.1 | 5.6e-07 | 52 | 75 | 6 | 29 |
HHHHHHHHHHHHHHHHHHHCTSCC CS HLH 6 nerErrRRdriNsafeeLrellPk 29 +++Er RR ri +++ +L++l+P+ KN545330.1_FGP001 52 SIAERERRTRISKRLKKLQDLVPN 75 689********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.623 | 46 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-6 | 49 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-5 | 51 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-4 | 52 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MVSSFSNIDS QFGLSKQSSL EMAGMDDFLQ LQPDSVACRA RAKRGCATHP RSIAERERRT 60 RISKRLKKLQ DLVPNMDK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN545330.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068254 | 1e-123 | AK068254.1 Oryza sativa Japonica Group cDNA clone:J013149F02, full insert sequence. | |||
GenBank | AK105713 | 1e-123 | AK105713.1 Oryza sativa Japonica Group cDNA clone:001-201-E12, full insert sequence. | |||
GenBank | HQ858859 | 1e-123 | HQ858859.1 Oryza sativa Japonica Group isolate UT1668 bHLH transcription factor mRNA, partial cds. | |||
GenBank | HQ858868 | 1e-123 | HQ858868.1 Oryza sativa Japonica Group isolate UT1677 HLH transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613853.1 | 1e-48 | transcription factor bHLH128 | ||||
Swissprot | Q9ZW81 | 2e-27 | BH129_ARATH; Transcription factor bHLH129 | ||||
TrEMBL | B9EVE1 | 5e-49 | B9EVE1_ORYSJ; Uncharacterized protein | ||||
TrEMBL | Q7F1Y1 | 1e-48 | Q7F1Y1_ORYSJ; B1065G12.3 protein | ||||
STRING | OGLUM01G44860.1 | 5e-48 | (Oryza glumipatula) | ||||
STRING | ORUFI01G44010.1 | 8e-49 | (Oryza rufipogon) | ||||
STRING | ORGLA01G0346300.1 | 5e-48 | (Oryza glaberrima) | ||||
STRING | OBART01G40680.1 | 5e-48 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7071 | 37 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43140.1 | 9e-30 | bHLH family protein |