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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
KN543388.1_FGP001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
M-type_MADS |
Protein Properties |
Length: 203aa MW: 22591.2 Da PI: 10.128 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
KN543388.1_FGP001 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 84.9 | 4.9e-27 | 17 | 66 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rie+ + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s
KN543388.1_FGP001 17 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALLVFSPAGRLYEFAS 66
8***********************************************86 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 203 aa
Download sequence Send
to blast |
MEGGGRRRKR GKVELRRIED RTSRQVRFSK RRSGLFKKAY ELSVLCDAQV ALLVFSPAGR 60 LYEFASSASS IDTIFGRYWD LLDTTIDLNI EARDSRVDCN IQVWIRKQIV HGGLAPLLAG 120 DATPPFRGVG VAPRLALWID DDTPPKIEVA KAGGMEGGMM DVNDGLQEFG LHLMIALVWY 180 FMRQGSLGNK GSIFGMTIIK VSK
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 1e-17 | 10 | 80 | 3 | 71 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-17 | 10 | 80 | 3 | 71 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-17 | 10 | 80 | 3 | 71 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-17 | 10 | 80 | 3 | 71 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-17 | 10 | 80 | 3 | 71 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-17 | 10 | 80 | 3 | 71 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-17 | 10 | 80 | 3 | 71 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-17 | 10 | 80 | 3 | 71 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-17 | 10 | 80 | 3 | 71 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-17 | 10 | 80 | 3 | 71 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK242980 | 1e-166 | AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence. |