PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN542610.1_FGP002

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 643aa MW: 70696 Da PI: 6.4397

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN542610.1_FGP002	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.3	1.9e-16	110	195	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle....leHnHel 89 fYn+YA+++GF+vrks+s+ r+ +Cs+egk++ + + +k++r+r + r+gC+a ++v++ ++ +v+ + +HnH+l KN542610.1_FGP002 110 FYNKYAEHAGFDVRKSRSRAA-------YREICCSREGKNKYRGYE-TKRERRRGSARIGCRAYVRVRNVVREGEVVSVVFddvlVQHNHPL 193 9*************98877.......7899********99.9999999**********998555555433334449***9 PP FAR1 90 ap 91 +p KN542610.1_FGP002 194 TP 195 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-11	110	195	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence Send to blast
MASGGEDPGP SDVRSHVPAL VADRSHLMQG NDVQRHDDVQ RGGLQQLSGG DGGGDTGSES 60 TRTDRPPCVD DAHMRTPTRN VMHIHGAHVP DEMVPKFGME FKSYEMAYAF YNKYAEHAGF 120 DVRKSRSRAA YREICCSREG KNKYRGYETK RERRRGSARI GCRAYVRVRN VVREGEVVSV 180 VFDDVLVQHN HPLTPSPSAV KHMRSHKQHG DTLMEFVDTM QQCRVPQSSI MGVLSDMHGD 240 RESIPFTTRD LENRTKVFSL DAQQLVKWGR RSSVAFERAT SVMKGLRNQL EEIPADVHGL 300 DADDGVSEHE VEVGDGARPS IHRGASAVDE ISRRPPPKST TKGRGSDPIE TVRLGAPGPK 360 KCTRGCSWCG LKDGHNVSTC PKNPANFERL AAASSRGKRK RGRPRGGGSG GSRGRKGVRR 420 TLMDEWEGGQ EDEGCSVQGD EGDGISVPND GDWEERCWLS TGDSTGRRVD GWNVWVGVDN 480 NVTVHDGLDS CLSISRGESI GAYMSGGADF GKELAKLPDG SPASPSIHGD SSGSHSPDRL 540 TPSPVMREVD LPPEFRVRGP PTPDWPPPPT ETDEERFRED LEQYYNDGYV STPCPSPPSD 600 LCDSEENLED EDEQDDNRRH GDVLPKVNQS KDTASPPSKR KKV

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence Send to blast

MASGGEDPGP SDVRSHVPAL VADRSHLMQG NDVQRHDDVQ RGGLQQLSGG DGGGDTGSES  60
TRTDRPPCVD DAHMRTPTRN VMHIHGAHVP DEMVPKFGME FKSYEMAYAF YNKYAEHAGF  120
DVRKSRSRAA YREICCSREG KNKYRGYETK RERRRGSARI GCRAYVRVRN VVREGEVVSV  180
VFDDVLVQHN HPLTPSPSAV KHMRSHKQHG DTLMEFVDTM QQCRVPQSSI MGVLSDMHGD  240
RESIPFTTRD LENRTKVFSL DAQQLVKWGR RSSVAFERAT SVMKGLRNQL EEIPADVHGL  300
DADDGVSEHE VEVGDGARPS IHRGASAVDE ISRRPPPKST TKGRGSDPIE TVRLGAPGPK  360
KCTRGCSWCG LKDGHNVSTC PKNPANFERL AAASSRGKRK RGRPRGGGSG GSRGRKGVRR  420
TLMDEWEGGQ EDEGCSVQGD EGDGISVPND GDWEERCWLS TGDSTGRRVD GWNVWVGVDN  480
NVTVHDGLDS CLSISRGESI GAYMSGGADF GKELAKLPDG SPASPSIHGD SSGSHSPDRL  540
TPSPVMREVD LPPEFRVRGP PTPDWPPPPT ETDEERFRED LEQYYNDGYV STPCPSPPSD  600
LCDSEENLED EDEQDDNRRH GDVLPKVNQS KDTASPPSKR KKV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN542610.1_FGP002

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003520	0.0	AP003520.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021H10.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B9GCP9	1e-147	B9GCP9_ORYSJ; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16258	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-11	FAR1-related sequence 5