PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN542505.1_FGP002

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 510aa MW: 56885.2 Da PI: 9.5581

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN542505.1_FGP002	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.9	1e-15	92	178	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkle...leHnHe 88 +fY++Y++++GF+++ks++k + r+ +C++egk++ + ++ +k++r r + r+gCka +kvk+ +g+++ +++ eHnH+ KN542505.1_FGP002 92 DFYERYSYNAGFDIKKSRNKPT-------FREICCTREGKNKYRGDE-SKRERMRGSARIGCKAYVKVKNVIrEGEFVSVRFDdviIEHNHP 175 6************9987665.......899********999.999999***********988666665445443339*** PP FAR1 89 lap 91 l+p KN542505.1_FGP002 176 LTP 178 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-11	92	178	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MESPVHTSTT SPLSRLGVGG DHWGDHHVNA GQPGSPSTPS GSKEGVDRPP CVQACEMNMP 60 EKDRVYSHGS KLREEMVPKV GMVFDSYEEA YDFYERYSYN AGFDIKKSRN KPTFREICCT 120 REGKNKYRGD ESKRERMRGS ARIGCKAYVK VKNVIREGEF VSVRFDDVII EHNHPLTPSP 180 SAVKLMRSHK HRDETLMEFV DTMQQSRVPN SSIGVPIVKT PWSFTEQLSR VYTRAVFKVF 240 EDSLHDRMFC PHLLRAFVHA QVEKIPHMYV LRRYTKQAKS DVNYDRRDRP MAGPDGVKES 300 YRTKLLSYDA MQIVKLGRRS KVAFDRATAV LKGLRKQLEE IPPDSDVGAG NAVTSGKGAE 360 GVADTMRAGQ SMSMSEHDCE RVSRRPPPRS MTKGRASEPT EKVKLGARGD KKCTRGCGWC 420 GLKVGHNSST CPNNPANFKR IAEANNKGKC KRGRPRGSGV GGGRGRKAVR RNLIDEWAEG 480 PVGGECSMRS EEGDDDCSVQ SGGDTEDLSE

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MESPVHTSTT SPLSRLGVGG DHWGDHHVNA GQPGSPSTPS GSKEGVDRPP CVQACEMNMP  60
EKDRVYSHGS KLREEMVPKV GMVFDSYEEA YDFYERYSYN AGFDIKKSRN KPTFREICCT  120
REGKNKYRGD ESKRERMRGS ARIGCKAYVK VKNVIREGEF VSVRFDDVII EHNHPLTPSP  180
SAVKLMRSHK HRDETLMEFV DTMQQSRVPN SSIGVPIVKT PWSFTEQLSR VYTRAVFKVF  240
EDSLHDRMFC PHLLRAFVHA QVEKIPHMYV LRRYTKQAKS DVNYDRRDRP MAGPDGVKES  300
YRTKLLSYDA MQIVKLGRRS KVAFDRATAV LKGLRKQLEE IPPDSDVGAG NAVTSGKGAE  360
GVADTMRAGQ SMSMSEHDCE RVSRRPPPRS MTKGRASEPT EKVKLGARGD KKCTRGCGWC  420
GLKVGHNSST CPNNPANFKR IAEANNKGKC KRGRPRGSGV GGGRGRKAVR RNLIDEWAEG  480
PVGGECSMRS EEGDDDCSVQ SGGDTEDLSE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN542505.1_FGP002

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003825	0.0	AP003825.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1343_D04.
GenBank	AP005452	0.0	AP005452.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0453E03.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883004.1	0.0	uncharacterized protein LOC112939687
TrEMBL	A0A0P0XA11	1e-180	A0A0P0XA11_ORYSJ; Os07g0664100 protein
STRING	OS07T0664100-00	0.0	(Oryza sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	5e-10	FAR1 family protein