PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN542337.1_FGP002

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 838aa MW: 97174.2 Da PI: 7.3511

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN542337.1_FGP002	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.9	1.7e-18	396	475	2	72
FAR1 2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek 72 f+n+YA+ +GFsv++++++k+ kr+geitk+t++C+ +gk+e+ +kk te++r+t + +t+Ck+++ + k++ KN542337.1_FGP002 396 FFNFYAYLAGFSVVIAHHYKTtskKRQGEITKYTYKCNLQGKNEPANKKksneqvTEQQRETVVLVKTNCKCTMLMWKNR 475 9*****************999999***************99999999999999***************887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.5E-17	396	474	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.446	608	644	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-5	619	646	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence Send to blast
MESEKKKAKK KREEEEPKSK IKSEEKIKTS RSKQGMKFTE PVRIGPLEKK ELNSISEHKQ 60 KVSFETQGNK QNHMKQNAGI RIMPYAEPNE NSKSITQGSK EGNNKTIQSG TNIHQLQDGE 120 RSLKESERNK IDTKHTEETS SSITQITGIG TTQSPQSPAL LHDELTMLKS HTTPVAQLSY 180 TSLMHQVINS PRINIEPNMG GRGLESFTSM LQTPSAYNNS MILTTSRVCE QDMLLEDRNN 240 DLLIPSKHYS YQEFDEIYNS ARITPEIPVD KTMEELYKLQ NTHLKSQGIP TSWATQNRDQ 300 EDFESDQPYN ESFHEQDIEE QQTRSEATEI SGIQQQQTEA EMNDNLNSGA NNGEELSEED 360 IDNFLQNEEE SSLPIDDKHI PKLGMKFKSH TEARGFFNFY AYLAGFSVVI AHHYKTTSKK 420 RQGEITKYTY KCNLQGKNEP ANKKKSNEQV TEQQRETVVL VKTNCKCTML MWKNRAQFVP 480 VYFKYDFCPF IQSTALSEGT NSRFKRGVGP QHSVMSFMKE YENINDTIFD TEYSKDFQSR 540 TKMPKTLWFN YLIEEQASEL YNLDIFRKFQ NELKDTLRLQ VSVIQQGKVY EVFVSPNSIQ 600 QEYRQRKHIV IIDLPNENFS CICGKFSKDG MLCSHILKVM LELNVRKIPE KYIIDRWRKK 660 EKKEKVKGSI HTDATDNSVL MFNVLSRKGA DIASKASKRK RTYQFMMEEL EKLEMNVQLM 720 IEQEAETHLS QDESNTVQND TVQQAEEEII EEVEIEDPDL ANTKGRKPKR YRRIVEKMIE 780 TSKRKNKDEQ HTTETRTSEI TNTGNKQEEM KTSKTTKRRK KNNTQEETPK EKLHAKTS

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence Send to blast

MESEKKKAKK KREEEEPKSK IKSEEKIKTS RSKQGMKFTE PVRIGPLEKK ELNSISEHKQ  60
KVSFETQGNK QNHMKQNAGI RIMPYAEPNE NSKSITQGSK EGNNKTIQSG TNIHQLQDGE  120
RSLKESERNK IDTKHTEETS SSITQITGIG TTQSPQSPAL LHDELTMLKS HTTPVAQLSY  180
TSLMHQVINS PRINIEPNMG GRGLESFTSM LQTPSAYNNS MILTTSRVCE QDMLLEDRNN  240
DLLIPSKHYS YQEFDEIYNS ARITPEIPVD KTMEELYKLQ NTHLKSQGIP TSWATQNRDQ  300
EDFESDQPYN ESFHEQDIEE QQTRSEATEI SGIQQQQTEA EMNDNLNSGA NNGEELSEED  360
IDNFLQNEEE SSLPIDDKHI PKLGMKFKSH TEARGFFNFY AYLAGFSVVI AHHYKTTSKK  420
RQGEITKYTY KCNLQGKNEP ANKKKSNEQV TEQQRETVVL VKTNCKCTML MWKNRAQFVP  480
VYFKYDFCPF IQSTALSEGT NSRFKRGVGP QHSVMSFMKE YENINDTIFD TEYSKDFQSR  540
TKMPKTLWFN YLIEEQASEL YNLDIFRKFQ NELKDTLRLQ VSVIQQGKVY EVFVSPNSIQ  600
QEYRQRKHIV IIDLPNENFS CICGKFSKDG MLCSHILKVM LELNVRKIPE KYIIDRWRKK  660
EKKEKVKGSI HTDATDNSVL MFNVLSRKGA DIASKASKRK RTYQFMMEEL EKLEMNVQLM  720
IEQEAETHLS QDESNTVQND TVQQAEEEII EEVEIEDPDL ANTKGRKPKR YRRIVEKMIE  780
TSKRKNKDEQ HTTETRTSEI TNTGNKQEEM KTSKTTKRRK KNNTQEETPK EKLHAKTS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN542337.1_FGP002

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881725.1	1e-126	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	C7J7B2	0.0	C7J7B2_ORYSJ; Os10g0490400 protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15026	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	6e-20	FAR1-related sequence 3