PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN542241.1_FGP002

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 1088aa MW: 125543 Da PI: 6.7515

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN542241.1_FGP002	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.1	1e-16	576	651	1	67
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklk 67 +f+n+YA +GFsv+++++++s krnge+++ tf+C+++gk+++e+++ + er++++ + t+C++ l KN542241.1_FGP002 576 DFFNFYALLAGFSVVIAHNYHStskKRNGEVIRVTFKCNRHGKAKSESQEeeteetVVAERNSNEIKATSCNCALS 651 6******************99999***************99999899888888999*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-15	576	651	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.423	831	867	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-4	832	867	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.4E-6	842	869	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1088 aa Download sequence Send to blast
MELEEEKDPP KHQSKSKMNS AEIKKRKIDL GKDQGSEKKE MSGKNIKCIK ETGTKGQSKE 60 LQKEESKSRK STKDKSKKNK DMTQVPANAE EFHKEYTTKV IRKESITDSS STEQVINTYS 120 IQEMETNEQV KSKDTSKAIA EKIHKEYSTK VNKQESRTVS NSKSKEQVIR TSNIEEKQKR 180 KQIISENNSK DMTQVQANAE EFHKEYTTKV NRQETITDSS SIEQVIGTSS IQEMETNEKV 240 KSKDTSKGNK DNGQSGRSIS LDTKKDVNLK YKDDRLILGK AKIFSKYHSE ITYYNFNFYE 300 AGRSISLDTG NKDNKDAERS IQPGNIQNMT QLVLTEHNAN TLISDMTQVP ANAERIHKEI 360 TTKVNKQESR KGNKDNKDAE RSIQPGNIQN MTQLVLTEHN ANTLISGAQN FSYTSLMEQI 420 ISSQPSISEV QQEISTESNF VATPRAFQNS MILTTSRTED IPFDMDYADT NQVEDEDLED 480 NELENWNLDM FNLSNGQNVQ NSADNSTEIG NQATTNVDAA ESNDSDANGE MLTEEDINNF 540 LEQEQEEATK GNNAAIDAKY IPRVDMQFKS IKEAHDFFNF YALLAGFSVV IAHNYHSTSK 600 KRNGEVIRVT FKCNRHGKAK SESQEEETEE TVVAERNSNE IKATSCNCAL SKEGLYDEYE 660 DIMNNSVTEE EFEYLWKEMV DSYEVQHINF LKHMWSIRKR FIPVYFKTNF CPFIKSTALS 720 EGTNSRFKKD VGPQYSITSF LIEYVRVMDT IQNLEQLDDH NSRTKRPSKL WSHYYIEYQA 780 VKLYNSKIFK KFQVELKRTT RLQLIEVEKL KTYEVFLALN QKIKVVRRRK YLVIVDSEKE 840 EYTCICSKFE KDGLLCSHIL KIMLHLNIMK IPEKYIIDRW RKKDYKEKSD FEDRIIPLSE 900 SSVLRFNILS RKCAEIASQG SKSIDSFQFA VDQIDKLEKE LISMNSEQRT KQQMEIDKTD 960 TTNGEVIEET EENNEEILID PDIAKSKGRP SQRYKSFREE LQSKEVYHCS HCQRTDHTFP 1020 TCPLKHIEFD LPRKKIRKTK NTAQKLQNAE EEQTDGSKKT NKGKKQEATT QVLVEQKGTK 1080 KRKTDGSS

Sequence ? help Back to Top

Protein Sequence Length: 1088 aa Download sequence Send to blast

MELEEEKDPP KHQSKSKMNS AEIKKRKIDL GKDQGSEKKE MSGKNIKCIK ETGTKGQSKE  60
LQKEESKSRK STKDKSKKNK DMTQVPANAE EFHKEYTTKV IRKESITDSS STEQVINTYS  120
IQEMETNEQV KSKDTSKAIA EKIHKEYSTK VNKQESRTVS NSKSKEQVIR TSNIEEKQKR  180
KQIISENNSK DMTQVQANAE EFHKEYTTKV NRQETITDSS SIEQVIGTSS IQEMETNEKV  240
KSKDTSKGNK DNGQSGRSIS LDTKKDVNLK YKDDRLILGK AKIFSKYHSE ITYYNFNFYE  300
AGRSISLDTG NKDNKDAERS IQPGNIQNMT QLVLTEHNAN TLISDMTQVP ANAERIHKEI  360
TTKVNKQESR KGNKDNKDAE RSIQPGNIQN MTQLVLTEHN ANTLISGAQN FSYTSLMEQI  420
ISSQPSISEV QQEISTESNF VATPRAFQNS MILTTSRTED IPFDMDYADT NQVEDEDLED  480
NELENWNLDM FNLSNGQNVQ NSADNSTEIG NQATTNVDAA ESNDSDANGE MLTEEDINNF  540
LEQEQEEATK GNNAAIDAKY IPRVDMQFKS IKEAHDFFNF YALLAGFSVV IAHNYHSTSK  600
KRNGEVIRVT FKCNRHGKAK SESQEEETEE TVVAERNSNE IKATSCNCAL SKEGLYDEYE  660
DIMNNSVTEE EFEYLWKEMV DSYEVQHINF LKHMWSIRKR FIPVYFKTNF CPFIKSTALS  720
EGTNSRFKKD VGPQYSITSF LIEYVRVMDT IQNLEQLDDH NSRTKRPSKL WSHYYIEYQA  780
VKLYNSKIFK KFQVELKRTT RLQLIEVEKL KTYEVFLALN QKIKVVRRRK YLVIVDSEKE  840
EYTCICSKFE KDGLLCSHIL KIMLHLNIMK IPEKYIIDRW RKKDYKEKSD FEDRIIPLSE  900
SSVLRFNILS RKCAEIASQG SKSIDSFQFA VDQIDKLEKE LISMNSEQRT KQQMEIDKTD  960
TTNGEVIEET EENNEEILID PDIAKSKGRP SQRYKSFREE LQSKEVYHCS HCQRTDHTFP  1020
TCPLKHIEFD LPRKKIRKTK NTAQKLQNAE EEQTDGSKKT NKGKKQEATT QVLVEQKGTK  1080
KRKTDGSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	823	829	KVVRRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN542241.1_FGP002

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL731623	0.0	AL731623.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083D01, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	Q0DQG4	0.0	Q0DQG4_ORYSJ; Os03g0598600 protein
STRING	OB09G10870.1	1e-164	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15335	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	2e-25	FAR1-related sequence 3