PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN542178.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 321aa    MW: 35108.2 Da    PI: 7.0718
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN542178.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.64e-091959142
                NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv 42
                       lppGfrFhPtd e++  yL +k  + +++    i evd++++
  KN542178.1_FGP001 19 LPPGFRFHPTDAEVILSYLLQKFLNPSFTS-LPIGEVDLNNH 59
                       79**********************999888.56999999876 PP
2NAM63.56.4e-205913063121
                NAM  63 krdkkyatgkrknratksgyWkatgkdkevlsk.............kgelvglkktLvfykgrapkgektdW 121
                        ++d ky+tg r+nratk+gyWkatgkd+e+++              +++lvg+kktLvfy grapkg+kt+W
  KN542178.1_FGP001  59 HKDMKYPTGMRANRATKEGYWKATGKDREIFNLqptsyggssnnksNKQLVGMKKTLVFYMGRAPKGTKTNW 130
                        6899***************************9888899888887776777********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-3316141IPR003441NAC domain
PROSITE profilePS5100517.16619155IPR003441NAC domain
PfamPF023659.2E-1520130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MVETSTSLVK LEQDGSLFLP PGFRFHPTDA EVILSYLLQK FLNPSFTSLP IGEVDLNNHK  60
DMKYPTGMRA NRATKEGYWK ATGKDREIFN LQPTSYGGSS NNKSNKQLVG MKKTLVFYMG  120
RAPKGTKTNW DEWVVCKVFH KKGDDREAIN KQQQQQQQAQ AAAVDLYSAG TPNNGSSVVE  180
AGDDDDDDLF QLDSIIDPSI YFSNSSAANI LSAPPNMSNS VVAANYGAST TTTSTASAGS  240
FQQQPNYYSL INKSSSSNVS SWNNMPPPPV AGGSVHRIGS SYSLQHQAAM VKALGDAIRL  300
PNPLGMPQYK LDDPYLWDSL K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-261714215166NO APICAL MERISTEM PROTEIN
1ut4_B1e-261714215166NO APICAL MERISTEM PROTEIN
1ut7_A1e-261714215166NO APICAL MERISTEM PROTEIN
1ut7_B1e-261714215166NO APICAL MERISTEM PROTEIN
4dul_A1e-261714215166NAC domain-containing protein 19
4dul_B1e-261714215166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in responses to drought stress and salt stress. Transactivates the stress response genes LEA19 and PM19L. {ECO:0000269|PubMed:19135985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN542178.1_FGP001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:19135985). Induced by drought stress (PubMed:19135985). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:19135985}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235250.0AC123525.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence.
GenBankAK0679220.0AK067922.1 Oryza sativa Japonica Group cDNA clone:J013121J10, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
GenBankCT8295090.0CT829509.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103O19, full insert sequence.
GenBankKP0331910.0KP033191.1 Oryza sativa cultivar Dong Jin NAC-related protein 45 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615868.11e-171NAC domain-containing protein 45
SwissprotQ2RB331e-172NAC45_ORYSJ; NAC domain-containing protein 45
TrEMBLA0A2H4CLX61e-169A0A2H4CLX6_ORYSJ; NAC transcription factor NAC45
STRINGOS11T0127600-011e-170(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-43Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zheng X,Chen B,Lu G,Han B
    Overexpression of a NAC transcription factor enhances rice drought and salt tolerance.
    Biochem. Biophys. Res. Commun., 2009. 379(4): p. 985-9
    [PMID:19135985]