PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541806.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 142aa    MW: 16008.6 Da    PI: 10.03
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541806.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.7e-13143855
                       HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       +Er RR+r+N++++ Lr ++Pk      +K++Ka+i++ A+ +I +Lq
  KN541806.1_FGP002  1 MERDRRKRLNEKLFALRAVVPKI-----TKMDKASIVRDAIAHIEKLQ 43
                       6*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000101.3E-10143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.61E-12147No hitNo description
SMARTSM003538.6E-12148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.64142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-14160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MERDRRKRLN EKLFALRAVV PKITKMDKAS IVRDAIAHIE KLQEEERQLL HEISVLQFNR  60
STSQSWPSDP QLQVSKVGEK TVAVSIRCAK TMGAMAKVCH AVESLRLKVV SASVAAVDGT  120
IVHTMFVEET SLIQTFEVTR YS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541806.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-92CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633867.11e-62transcription factor bHLH35
SwissprotQ2HIV98e-33BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A0D3FTX52e-62A0A0D3FTX5_9ORYZ; Uncharacterized protein
STRINGOGLUM04G06590.11e-61(Oryza glumipatula)
STRINGOS04T0300600-001e-61(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.22e-35bHLH family protein