PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541674.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 356aa    MW: 38990.6 Da    PI: 6.0365
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541674.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0007209231123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y C++C++ Fs++  L  H+  H
  KN541674.1_FGP002 209 YMCKHCNEEFSTHQALGGHMAGH 231
                        89******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.64E-6206236No hitNo description
PfamPF139122.1E-7209234IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.596209236IPR007087Zinc finger, C2H2
PROSITE patternPS000280211232IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSGCSWLCSL VILQAVCSAC WQVAGANSLR LAAGQIGGVF VYLQDPSLMS RRARDELVDG  60
SCSGDEDLAD HGAWPQPGGG GAGGDHGGVP RGGEAGEAEA DVDVDGGDGG SAGEVECQKL  120
AACVILTLRR RHDRDQRQLQ APPKLERAGA GAGDQLATNM VEGAEGSSRA IVGDEHEHEA  180
RRRKKGKRKL KEPREGERKV KKEKKRHPYM CKHCNEEFST HQALGGHMAG HHKEKRTLLK  240
EKQPEGSLVL EKEPERSHHL MEEKHPERGL ILEKKQLERS SIVLEKIQPD RSLILEEEQP  300
EVVYQDKIDQ TMNWQKTERN EGASYLGGGS NTAPIAQEDS RPPFGFDLNV EAPEQE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182189RKKGKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541674.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061640.0AP006164.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1386G10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642158.11e-121uncharacterized protein LOC107278701
TrEMBLA0A0D3GFR11e-154A0A0D3GFR1_9ORYZ; Uncharacterized protein
STRINGOBART06G12060.11e-155(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139162028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.16e-06C2H2 family protein