 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
KN541674.1_FGP002 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C2H2 |
| Protein Properties |
Length: 356aa MW: 38990.6 Da PI: 6.0365 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KN541674.1_FGP002 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 11.9 | 0.0007 | 209 | 231 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y C++C++ Fs++ L H+ H
KN541674.1_FGP002 209 YMCKHCNEEFSTHQALGGHMAGH 231
89******************985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 356 aa
Download sequence Send
to blast |
MSGCSWLCSL VILQAVCSAC WQVAGANSLR LAAGQIGGVF VYLQDPSLMS RRARDELVDG 60
SCSGDEDLAD HGAWPQPGGG GAGGDHGGVP RGGEAGEAEA DVDVDGGDGG SAGEVECQKL 120
AACVILTLRR RHDRDQRQLQ APPKLERAGA GAGDQLATNM VEGAEGSSRA IVGDEHEHEA 180
RRRKKGKRKL KEPREGERKV KKEKKRHPYM CKHCNEEFST HQALGGHMAG HHKEKRTLLK 240
EKQPEGSLVL EKEPERSHHL MEEKHPERGL ILEKKQLERS SIVLEKIQPD RSLILEEEQP 300
EVVYQDKIDQ TMNWQKTERN EGASYLGGGS NTAPIAQEDS RPPFGFDLNV EAPEQE
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 182 | 189 | RKKGKRKL |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP006164 | 0.0 | AP006164.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1386G10. |
| GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
