PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541604.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 695aa    MW: 73733.9 Da    PI: 3.8396
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541604.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.86e-2591381128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk... 88 
                        lppG++F+P+d+elv ++L ++++gk+l+l+ vi ++d + + Pw+L +  +++ ++ +fF+ ++ k+ +g+r++r +   gyW+ +     
  KN541604.1_FGP005   9 LPPGLKFEPKDDELVARFLLARIQGKPLPLHGVILDADPLCAPPWRLLAD-HGRGDDAFFFADARAKNGKGSRQKRtVEGGGYWQGQRMcvd 99 
                        79****************************99***************744.4566799******************555599***7765444 PP

                NAM  89 .dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++ v+  + e  + k +L ++ ++ +kg ++ Wvmhey++
  KN541604.1_FGP005 100 gERLVVPDGVEIAWRKYVLSYF-ADGEKG-SSGWVMHEYAI 138
                        3455555455556667778887.566665.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-334157IPR003441NAC domain
PROSITE profilePS5100529.1399157IPR003441NAC domain
PfamPF023658.6E-1510137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MAAAAGDGLP PGLKFEPKDD ELVARFLLAR IQGKPLPLHG VILDADPLCA PPWRLLADHG  60
RGDDAFFFAD ARAKNGKGSR QKRTVEGGGY WQGQRMCVDG ERLVVPDGVE IAWRKYVLSY  120
FADGEKGSSG WVMHEYAITA PADLASSTMR LYRIRFSGHG KKRKREPESQ SDNHQIAVAE  180
TAMLEDSAPP PQPVHPPAAV VNCVSDGTDQ GFSGAVPPPA PVVHHTNDSD VTDRYSSLVF  240
SDQPESIYED ELQSFVPEFP ARNLFVSLPE GSHEAEPAQS VPSLADVGGP ENMDDQSCSG  300
VVFANLPELI VLPSAPSLDN QNDEAPVFFE FPESMDDIVG CFDFATMDDP SCTSAISEEP  360
FLPPAAMVNH DDGYASDNAD QGCSGAVPLP SEVVDLPNET DGADQSCSGL GDNSTLVFSD  420
LTRSIDEDEL QSFVPEFVSL PQGSCEADAE ADSGGGVVPA RFAEFGGSES MDDSSMMYPL  480
NFPAEAGGGG GRAAPASSWV SSQDNQNDEA PMSFELPESL DDMVGCFDFA AMDGQSCASA  540
VSETALIEEL VLPPAAMVNH HDDSVSDIAD HGCSGSVPPP SAVVDLPNDS DQSCSGYYEA  600
ELKVPLEYAA RNPVDSPAKG GNEAKVDASN GAGSMMSSPD KQKEHSSSGV MDVEATGFGV  660
PDSMDSLSCI DFAETMDDLS CIDFTIDDEL FDLWS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541604.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0HXW50.0A0A0E0HXW5_ORYNI; Uncharacterized protein
STRINGONIVA07G05240.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.24e-12NAC family protein