PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

KN541585.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 121aa MW: 13572.3 Da PI: 10.1106

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN541585.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.9	6.4e-10	14	44	1	31
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 +g+WT+eEd+llvd+++ G g+W++ ++ KN541585.1_FGP001 14 KGPWTPEEDKLLVDYIQANGHGSWRLLPKLA 44 79***********************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-12	5	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.94E-8	9	43	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.821	9	69	IPR017930	Myb domain
SMART	SM00717	0.0089	13	85	IPR001005	SANT/Myb domain
Pfam	PF00249	6.4E-8	14	44	IPR001005	SANT/Myb domain
CDD	cd00167	9.95E-5	16	42	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MGRAPCCDKK GLKKGPWTPE EDKLLVDYIQ ANGHGSWRLL PKLAEKGVNA PDSRWGQTDE 60 KKNLLPRSDK RPNQSSERFA TTPAAQEQPV ACGGFIARKE QKWAGQARRP YANDSLSGRY 120 Y

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN541585.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004133	1e-121	AP004133.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_G03.
GenBank	AP014958	1e-121	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-121	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	Q6H7R9	4e-43	Q6H7R9_ORYSJ; Uncharacterized protein OJ1112_G03.10

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	3e-21	myb domain protein 17