PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541304.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 268aa    MW: 29804 Da    PI: 10.1193
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541304.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.72e-3541591128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 
                        +p+G+rF+Ptd+el+ e+L++kv++        ++++ + i+   +i++++P++Lp  v+ +  + +fF++++k+y+tg+rk+r+       
  KN541304.1_FGP003   4 MPAGVRFDPTDQELI-EHLEAKVKDGGstshplIDEFIHtIQGEdGICYTHPENLP-GVTRDGLSKHFFHRSAKAYPTGTRKRRKvladqqp 93 
                        699************.99******9987777664443344777756**********.555666799******************88****** PP

                NAM  78 ..............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                      +++ +W++tgk++++++ +g+ +g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  KN541304.1_FGP003  94 ddqlpqaskgrnvaAAETRWHKTGKTRAITV-RGQPKGCKKILVLYtsFGKKRKAEKTSWVMHQYHL 159
                        ***********99877899************.999***********55589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-343178IPR003441NAC domain
PROSITE profilePS5100530.6154178IPR003441NAC domain
PfamPF023651.6E-165159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVWMPAGVRF DPTDQELIEH LEAKVKDGGS TSHPLIDEFI HTIQGEDGIC YTHPENLPGV  60
TRDGLSKHFF HRSAKAYPTG TRKRRKVLAD QQPDDQLPQA SKGRNVAAAE TRWHKTGKTR  120
AITVRGQPKG CKKILVLYTS FGKKRKAEKT SWVMHQYHLG ELDDEKEGEL ILSKVFYQTQ  180
TRSAAAAEAP DVVAQVKVDR GHHCMPAQRQ VNFNLKVTPV PTTSSLPVVV DKQLYSPVAL  240
FRSEHLHVGK NFNSSAPKGR LASPALAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-12415915140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541304.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422270.0AK242227.1 Oryza sativa Japonica Group cDNA, clone: J075175B09, full insert sequence.
GenBankJQ0880960.0JQ088096.1 Oryza sativa Japonica Group NAC transcription factor 85 (NAC85) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637950.10.0NAC domain-containing protein 75 isoform X2
SwissprotQ9M0F84e-84NAC75_ARATH; NAC domain-containing protein 75
TrEMBLI1PT520.0I1PT52_ORYGL; Uncharacterized protein
TrEMBLQ6L4N90.0Q6L4N9_ORYSJ; Os05g0194500 protein
STRINGOS05T0194500-010.0(Oryza sativa)
STRINGORGLA05G0055000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174251011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.15e-76NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]