PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541216.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 281aa    MW: 31908.1 Da    PI: 9.4576
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541216.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.3e-1610861796
                       E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                       ++p kf++++  g++ +s + ++ ++ g+sW+v+l  +k +++++l++GW +F + +g+  gD+v+F+++g+  f  +++v
  KN541216.1_FGP002 10 RIPDKFIRDYiTGENLNSNMAIILSPLGKSWRVEL--DKDQSGVFLGGGWLQFLSFHGISRGDVVIFRYEGNLVF--KISV 86
                       79*********555567889999************..*******************************9987666..4444 PP
2B377.81.2e-24174268184
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS............-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-E CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg............rsWevkliyrkksgr.yvltkGWkeFvkangLkegDf 79 
                        ++k++++++vl++++l+l ++f+e++g  +e+s+tl++ d+++            rsWev+   r+++++ y+l++GW++F+++ng+++gD+
  KN541216.1_FGP002 174 WIKKEINEYVLERCILSLARTFCESIGFAEESSITLMMIDTTStqgdqggsssssRSWEVTG--RRYKDAcYLLGAGWRRFCEDNGVRSGDV 263
                        789***********************9999**********99999*****************..9999999********************* PP

                        EEEEE CS
                 B3  80 vvFkl 84 
                        +vF++
  KN541216.1_FGP002 264 CVFTV 268
                        ***95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.493190IPR003340B3 DNA binding domain
SMARTSM010193.4E-8390IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.6E-17790IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-17790IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-13982IPR003340B3 DNA binding domain
CDDcd100171.22E-141087No hitNo description
SuperFamilySSF1019362.35E-14170279IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-16171279IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.928174281IPR003340B3 DNA binding domain
PfamPF023627.3E-14174270IPR003340B3 DNA binding domain
SMARTSM010198.2E-4175279IPR003340B3 DNA binding domain
CDDcd100174.95E-7179267No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MHISLPFQQR IPDKFIRDYI TGENLNSNMA IILSPLGKSW RVELDKDQSG VFLGGGWLQF  60
LSFHGISRGD VVIFRYEGNL VFKISVFGVN GRQKDFKAKG ISIHQGTGEQ QEAPSFSRRK  120
CNNKKKSRFG EDDGNQQEMP CSRKGSGNKG RTSDRETKRM RKTRSVYEIG PRSWIKKEIN  180
EYVLERCILS LARTFCESIG FAEESSITLM MIDTTSTQGD QGGSSSSSRS WEVTGRRYKD  240
ACYLLGAGWR RFCEDNGVRS GDVCVFTVLD TTLWRVDIER C
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541216.1_FGP002
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629631e-161AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence.
GenBankAP0149601e-161AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-161CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551081e-161CR855108.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0111I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881011.10.0putative B3 domain-containing protein Os04g0346900
SwissprotQ7XS750.0Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLA0A0D9ZJ770.0A0A0D9ZJ77_9ORYZ; Uncharacterized protein
STRINGOGLUM04G08130.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.13e-13B3 family protein