PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541190.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 276aa    MW: 30486.5 Da    PI: 7.6891
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541190.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.52.6e-062145123
                       EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                       + Cp   Cgk Fs   nL++H++tH
  KN541190.1_FGP001 21 FICPhpGCGKAFSLDFNLRSHLKTH 45
                       78**********************9 PP
2zf-C2H217.21.4e-055175123
                       EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                       ++Cp   Cgk+F++ s Lk+H + H
  KN541190.1_FGP001 51 HVCPfpACGKRFTSDSKLKSHVKGH 75
                       789999***************9988 PP
3zf-C2H2193.8e-06136161123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        y+Cp   Cgk + +++ L+ H++t H
  KN541190.1_FGP001 136 YVCPydGCGKAYIHSYKLNLHLKTqH 161
                        9**********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.15E-13255No hitNo description
Gene3DG3DSA:3.30.160.604.2E-18546IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.8222150IPR007087Zinc finger, C2H2
SMARTSM003550.00112145IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802345IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.5E-94975IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.3675180IPR007087Zinc finger, C2H2
SMARTSM003550.0125175IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805375IPR007087Zinc finger, C2H2
SuperFamilySSF576678.41E-85475No hitNo description
SuperFamilySSF576678.41E-8131159No hitNo description
Gene3DG3DSA:3.30.160.602.8E-10132161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.619136169IPR007087Zinc finger, C2H2
SMARTSM003550.0021136161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
KFVDSSKLKR HHLIHTGQKD FICPHPGCGK AFSLDFNLRS HLKTHALENY HVCPFPACGK  60
RFTSDSKLKS HVKGHEKTGT PITAQYVPSS DKPQSSSKPA TPATTKPTTP AATKTTTPAS  120
TKPTTPAPTS FAERPYVCPY DGCGKAYIHS YKLNLHLKTQ HPEHGQEENG RIAAHASEHA  180
VNDRANQYNY AEIVDLAPNP KRSKTNSGHK TPSSNKAYNV KISSVSPADI SGVKNQWPGK  240
YEDDSEETEE DQGNNIEDGW RYGNQNADDE ETEYED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-2327744119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541190.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1034440.0AK103444.1 Oryza sativa Japonica Group cDNA clone:J033129E14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637702.10.0zinc finger transcription factor YY1
TrEMBLA0A0E0DKW20.0A0A0E0DKW2_9ORYZ; Uncharacterized protein
STRINGOMERI05G00500.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.22e-51C2H2 family protein