PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN541071.1_FGP002

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 606aa MW: 69998.7 Da PI: 5.0961

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN541071.1_FGP002	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.6	2e-23	308	407	1	91
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 +++n+YA+++GFs+++ +s ++ krnge+++ tf+C+k+ k+e+++kk +er+t+++ t+C++ l++ ++ +++w++t+++ KN541071.1_FGP002 308 EYFNFYAYMAGFSIVNVHSARTvskKRNGEVIRVTFKCNKYVKAEPSSKKkkekeeiVISERKTNEVIGTECECVLVICER-NSEWVITRID 398 59**************99998999**************9999997777777777888************99.9***** PP FAR1 83 leHnHelap 91 l+HnHel+p KN541071.1_FGP002 399 LDHNHELSP 407 *****86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.3E-23	308	407	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence Send to blast
MRKKLTRNSL GELTKQESCK GNISDYCKCL TKAVKIDQIQ VNADMTQVTG ITGEKCKGCT 60 LTVNTQESRT VSKKKDMSEL TEMSEEKTKE GTRQDSNTDS KKQGVQIPGT IKMVQDKKLQ 120 TGENSVEKDQ KSEEQHCTNI DDSKLDKLAV KYNKVELRNE KTARTDKFTS YTSLMQQIIS 180 SQQTTSNDFE VEPICVETLE KENFEKNAED DQIEFELNDH QSTEAWSLDM FNLKDCVEFQ 240 DQHLVESNQN NESKNDAGQN EEDLTEYDIE QFLNEERQEA TKGNNANIDR KYIPELHQKF 300 KSVEEAQEYF NFYAYMAGFS IVNVHSARTV SKKRNGEVIR VTFKCNKYVK AEPSSKKKKE 360 KEEIVISERK TNEVIGTECE CVLVICERNS EWVITRIDLD HNHELSPPDE VRFLRGSKTI 420 ETYQYLLEES NKISSTLKSM IEECENQNVN AEDNNLQNGN AEINEDPENT DVEEQTFENA 480 EVNENPENID EVNDKEYLQD PDIANSKGRP RERYISIREQ IKEKETNHCS HCGRIEHTFP 540 TYPFKHIEFD LPRKKKRKVQ NKAKEDGQEQ KKNAAPGKRK SLKDKTMGST RCNVEVQNSS 600 KKMKKN

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence Send to blast

MRKKLTRNSL GELTKQESCK GNISDYCKCL TKAVKIDQIQ VNADMTQVTG ITGEKCKGCT  60
LTVNTQESRT VSKKKDMSEL TEMSEEKTKE GTRQDSNTDS KKQGVQIPGT IKMVQDKKLQ  120
TGENSVEKDQ KSEEQHCTNI DDSKLDKLAV KYNKVELRNE KTARTDKFTS YTSLMQQIIS  180
SQQTTSNDFE VEPICVETLE KENFEKNAED DQIEFELNDH QSTEAWSLDM FNLKDCVEFQ  240
DQHLVESNQN NESKNDAGQN EEDLTEYDIE QFLNEERQEA TKGNNANIDR KYIPELHQKF  300
KSVEEAQEYF NFYAYMAGFS IVNVHSARTV SKKRNGEVIR VTFKCNKYVK AEPSSKKKKE  360
KEEIVISERK TNEVIGTECE CVLVICERNS EWVITRIDLD HNHELSPPDE VRFLRGSKTI  420
ETYQYLLEES NKISSTLKSM IEECENQNVN AEDNNLQNGN AEINEDPENT DVEEQTFENA  480
EVNENPENID EVNDKEYLQD PDIANSKGRP RERYISIREQ IKEKETNHCS HCGRIEHTFP  540
TYPFKHIEFD LPRKKKRKVQ NKAKEDGQEQ KKNAAPGKRK SLKDKTMGST RCNVEVQNSS  600
KKMKKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	553	558	KKKRKV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN541071.1_FGP002

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL731785	1e-37	AL731785.2 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	1e-37	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	Q75L92	3e-76	Q75L92_ORYSJ; Uncharacterized protein