PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540912.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 767aa    MW: 84558.4 Da    PI: 5.0491
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540912.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC54.13.5e-175205952398
              NF-YC  23 larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                        larikki++adedv +i+  +Pvl+s+a elf+ +l  r++  + ++  +tl+   ++++v r   fdfl+++v +
  KN540912.1_FGP004 520 LARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVRRYSSFDFLTEVVNK 595
                        89*********************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010827.0E-7426461IPR019098Histone chaperone domain CHZ
PfamPF096491.5E-9427459IPR019098Histone chaperone domain CHZ
PfamPF008084.6E-16520580IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.8E-22520594IPR009072Histone-fold
SuperFamilySSF471137.62E-18527597IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MARVFDAPQD PPRSLVATLA HHGRLKCCWA TVGYLVAQGS EEPRVVAALY SAFQLFKDNN  60
GCASDFLCLS SSLTLEGVRR ALEKDMGLEK HSLDAHKKFI KQCVDKVFSG SDDDNTNNNA  120
PEKDEAKDDR SSKEESEDAQ PTSDSNKISS NADELVAKSS ETDRDQEGDK DHSSGSDISE  180
ATIKNAIVKR ASYFRENSET ITLQGVRRTL EEDLKLQKKA LDAYKSFIST ELDNILQEPA  240
NGTKKTSKTE SHKDSGQKTS KNSKRARQDS DTSEINDSHC ERGDSDEDAR PKKKKAEKGK  300
AVKRQKKTTV EKQLSNSKAK KVAKKDLDKS KERSGSEEDN SNSSAEEDNK KKRQVAPAYG  360
KRVERLKSII KSCGMSIAPT VYRKAKMAPE SKREACLIKE LEDILEKEGL STNPSEKEIK  420
AVKKRKERAK ELEGIDMSNI ITSSRRRSTS NFIPLPTPKI VADSDEDDEE DAEDDNDEEV  480
NVEGGDEGDN DDGKAGDGSA DDGHQPEFQI YTELSSLRVL ARIKKIMQAD EDVGKIALAV  540
PVLVSRALEL FLQDLIDRTY EITLQSGAKT LNSFHLKQCV RRYSSFDFLT EVVNKVPDLG  600
GADSCGDDRA LPRRRKALPN GSDPENEESR SSKMAVRSAN ISPRGRGRGR GRGRGRPPTK  660
RKEVGYVQFE DESSMFADQG EALPGEETVP ETIHGTESIP PSTHPPAEAP SAAEIPAPNP  720
KVEEAKNDDH QPDWPMPDAI GNIGVGPSGF GHLTVQVDED EDYDNED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A5e-185215801574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1419425KAVKKRK
2611615PRRRK
3645654RGRGRGRGRG
4645655RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540912.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641280.0AK064128.1 Oryza sativa Japonica Group cDNA clone:002-102-E08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615081.10.0HIRA-interacting protein 3
TrEMBLI1R0U80.0I1R0U8_ORYGL; Uncharacterized protein
STRINGORGLA11G0139000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP796022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.13e-42nuclear factor Y, subunit C11