PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540819.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 350aa    MW: 40197.2 Da    PI: 6.5117
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540819.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.7e-10381071486
                        T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-S CS
                 B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldg 86 
                        + +++p k a++++g+ ++     l+ +sg++W+v +  +k  ++ +l +GW++F+ka++   + D+++F  +g
  KN540819.1_FGP004  38 HGISIPEKVADRFSGQITK--GFNLKAPSGETWRVSV--EKVADELILMSGWEDFAKAHEFSfSFDVLIFDASG 107
                        459**********888555..59999***********..**********************9888999999654 PP
2B342.89.6e-14244340198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                        f++vl  +  +++g+l++p  fa++h  +  +s+++ l+   + ++W vk+ +  + +++  +  W +F ++n+L+eg +++F+l++  ++ 
  KN540819.1_FGP004 244 FVTVLQAPQIHRKGLLIVPSGFAADHLDS--RSQEILLMRpNKKEKWYVKYYHASTTRGFNCQ-RWIKFIRENRLREGYICIFELMKGaRRV 332
                        788888999999**************544..44566666637779******556666666666.9*******************99777999 PP

                        ..EEEEE- CS
                 B3  91 elvvkvfr 98 
                        +++v+v+ 
  KN540819.1_FGP004 333 TMTVHVIG 340
                        99999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.04E-1221108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.625119IPR003340B3 DNA binding domain
CDDcd100171.63E-727104No hitNo description
SMARTSM010190.04728121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-1028109IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-737106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-17237340IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-18237340IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-14242339No hitNo description
SMARTSM010197.6E-10244342IPR003340B3 DNA binding domain
PfamPF023622.0E-12244340IPR003340B3 DNA binding domain
PROSITE profilePS5086311.899244342IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGEKGCESCR EWQEHCYREH MDVSRIRFFR LMTGDFAHGI SIPEKVADRF SGQITKGFNL  60
KAPSGETWRV SVEKVADELI LMSGWEDFAK AHEFSFSFDV LIFDASGCEK VSCFFIGKKN  120
SIGGQTQNAE QYHLSDSEDT STPSTFLVES PHKASTSKKL NGKTKTNPNK DDPFSTGKEP  180
EDPNSSRSHV KHEMIEEEKS DDDDEHADYE HADYYYSRFA NYLTGEEREE IFSLVSLQPG  240
NPVFVTVLQA PQIHRKGLLI VPSGFAADHL DSRSQEILLM RPNKKEKWYV KYYHASTTRG  300
FNCQRWIKFI RENRLREGYI CIFELMKGAR RVTMTVHVIG KVDDRFVLLG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540819.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8317971e-150AL831797.4 Oryza sativa chromosome 12, . BAC OSJNBa0010M16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-150AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126201e-150CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878095.10.0B3 domain-containing protein Os12g0592300 isoform X1
SwissprotQ2QMT20.0Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A0E0GW030.0A0A0E0GW03_ORYNI; Uncharacterized protein
TrEMBLA0A0E0RJG10.0A0A0E0RJG1_ORYRU; Uncharacterized protein
TrEMBLA2ZM950.0A2ZM95_ORYSI; Uncharacterized protein
STRINGORUFI12G19440.10.0(Oryza rufipogon)
STRINGONIVA03G41700.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-20B3 family protein