 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
KN540819.1_FGP004 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
B3 |
| Protein Properties |
Length: 350aa MW: 40197.2 Da PI: 6.5117 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KN540819.1_FGP004 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 31.7 | 2.7e-10 | 38 | 107 | 14 | 86 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-S CS
B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldg 86
+ +++p k a++++g+ ++ l+ +sg++W+v + +k ++ +l +GW++F+ka++ + D+++F +g
KN540819.1_FGP004 38 HGISIPEKVADRFSGQITK--GFNLKAPSGETWRVSV--EKVADELILMSGWEDFAKAHEFSfSFDVLIFDASG 107
459**********888555..59999***********..**********************9888999999654 PP
|
| 2 | B3 | 42.8 | 9.6e-14 | 244 | 340 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90
f++vl + +++g+l++p fa++h + +s+++ l+ + ++W vk+ + + +++ + W +F ++n+L+eg +++F+l++ ++
KN540819.1_FGP004 244 FVTVLQAPQIHRKGLLIVPSGFAADHLDS--RSQEILLMRpNKKEKWYVKYYHASTTRGFNCQ-RWIKFIRENRLREGYICIFELMKGaRRV 332
788888999999**************544..44566666637779******556666666666.9*******************99777999 PP
..EEEEE- CS
B3 91 elvvkvfr 98
+++v+v+
KN540819.1_FGP004 333 TMTVHVIG 340
99999986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MGEKGCESCR EWQEHCYREH MDVSRIRFFR LMTGDFAHGI SIPEKVADRF SGQITKGFNL 60
KAPSGETWRV SVEKVADELI LMSGWEDFAK AHEFSFSFDV LIFDASGCEK VSCFFIGKKN 120
SIGGQTQNAE QYHLSDSEDT STPSTFLVES PHKASTSKKL NGKTKTNPNK DDPFSTGKEP 180
EDPNSSRSHV KHEMIEEEKS DDDDEHADYE HADYYYSRFA NYLTGEEREE IFSLVSLQPG 240
NPVFVTVLQA PQIHRKGLLI VPSGFAADHL DSRSQEILLM RPNKKEKWYV KYYHASTTRG 300
FNCQRWIKFI RENRLREGYI CIFELMKGAR RVTMTVHVIG KVDDRFVLLG
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL831797 | 1e-150 | AL831797.4 Oryza sativa chromosome 12, . BAC OSJNBa0010M16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | AP014968 | 1e-150 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012620 | 1e-150 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
