PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540758.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 646aa MW: 72096 Da PI: 8.4435

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540758.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57	6.5e-18	199	279	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn ++ e GFs+r +s++++++++ +++f C++ gk+++++kk +tr+gC a++++ + ++g ++v++l+ eHnH+l+ KN540758.1_FGP001 199 QFYNLHSWESGFSIRHGTSQTNTKKDQRNMQQFDCQRAGKPRKNQKK---------TTRCGCPARMRLLRCSTGGYYVKTLVAEHNHSLV 279 6*******************99999**********998877.........9*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.6E-15	199	279	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.124	401	437	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0088	412	439	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence Send to blast
MDPMDSGQSF LGLMASIQQG GLNFEPSNFK TIHPIGDVPK GGGGNLHSAL SVAPEANKQI 60 ETPISTAPEA INMSSYSTGA QNTTKIVKAC NETRQVFFEA MSKETEDDFT EKSTEETNSH 120 VCSEYEAGLS DSDFMYDSSA SSSSRRRKRK WAGTDLLMGN PNFAGAIEKA IRNADRRASA 180 NICQPYEGQC FDSLAEAYQF YNLHSWESGF SIRHGTSQTN TKKDQRNMQQ FDCQRAGKPR 240 KNQKKTTRCG CPARMRLLRC STGGYYVKTL VAEHNHSLVE SCGEKRHLFS HKSIDESTKQ 300 MVRHLRENNV SLSKYAKLTH MREEDDDEQQ KNNSQQEIIP VLRYPIVKHA AQVYTNCVYD 360 MFMEEVTKST SYVVNTVEGN KLYQCTHTNS EEIESWCRTT YNVSVDNVTQ KYNCECGLSN 420 HFGILCCHAI SVMLHLGVRS IPESHIMTRW TKKARDTLPD HLSKFPDAGG IAQAKVFRRN 480 VLQSTANEIV RMGDSDNLAF EILLRYLGEA KKEILKVCSN RSDSSSVCQA TDCTSIPNSS 540 VEALGSQECC SNGFSLVDKS SNTVIPVDQI KAPESSRHFG RPSNQRYHSG VEGRITRVQK 600 SSNGTIVGRG GKVKSGVKLP RYCRLCRKPN HDARTCPEKM KVKGIA

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence Send to blast

MDPMDSGQSF LGLMASIQQG GLNFEPSNFK TIHPIGDVPK GGGGNLHSAL SVAPEANKQI  60
ETPISTAPEA INMSSYSTGA QNTTKIVKAC NETRQVFFEA MSKETEDDFT EKSTEETNSH  120
VCSEYEAGLS DSDFMYDSSA SSSSRRRKRK WAGTDLLMGN PNFAGAIEKA IRNADRRASA  180
NICQPYEGQC FDSLAEAYQF YNLHSWESGF SIRHGTSQTN TKKDQRNMQQ FDCQRAGKPR  240
KNQKKTTRCG CPARMRLLRC STGGYYVKTL VAEHNHSLVE SCGEKRHLFS HKSIDESTKQ  300
MVRHLRENNV SLSKYAKLTH MREEDDDEQQ KNNSQQEIIP VLRYPIVKHA AQVYTNCVYD  360
MFMEEVTKST SYVVNTVEGN KLYQCTHTNS EEIESWCRTT YNVSVDNVTQ KYNCECGLSN  420
HFGILCCHAI SVMLHLGVRS IPESHIMTRW TKKARDTLPD HLSKFPDAGG IAQAKVFRRN  480
VLQSTANEIV RMGDSDNLAF EILLRYLGEA KKEILKVCSN RSDSSSVCQA TDCTSIPNSS  540
VEALGSQECC SNGFSLVDKS SNTVIPVDQI KAPESSRHFG RPSNQRYHSG VEGRITRVQK  600
SSNGTIVGRG GKVKSGVKLP RYCRLCRKPN HDARTCPEKM KVKGIA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540758.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	2e-12	FAR1-related sequence 10