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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540735.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 156aa MW: 17975.4 Da PI: 9.4076 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 52.4 | 1.7e-16 | 11 | 97 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle.leHnHela 90 kfY++YA ++GF+++ks+++k r+ +C++egk+ ++ ++ +++r+r+++++gCka +k++ ++ + + +v++++ l+HnH+l+ KN540735.1_FGP001 11 KFYQTYACHAGFDIKKSRTHKA-------FREVCCTREGKHVSKVTD-GDRQRRRPSKKMGCKAYVKLRHNYdggKITSVVYDVVeLQHNHPLM 96 6****************99887.......7899**********9999.99999******************9642223345544349*****98 PP FAR1 91 p 91 p KN540735.1_FGP001 97 P 97 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-11 | 11 | 97 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MAFPTYDDAY KFYQTYACHA GFDIKKSRTH KAFREVCCTR EGKHVSKVTD GDRQRRRPSK 60 KMGCKAYVKL RHNYDGGKIT SVVYDVVELQ HNHPLMPSPS AVKHMRAHKN RDDTVMQFVD 120 TMQESHVPQS CIMGVLSDLH GGQENIPFTS RDIENR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 56 | DRQRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540735.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882211.1 | 3e-90 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0P0XSM8 | 1e-109 | A0A0P0XSM8_ORYSJ; Os10g0156701 protein | ||||
TrEMBL | Q8SB60 | 1e-105 | Q8SB60_ORYSJ; Uncharacterized protein | ||||
STRING | ORGLA10G0024000.1 | 1e-103 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7609 | 10 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 3e-13 | FAR1-related sequence 11 |