PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540724.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BBR-BPC
Protein Properties Length: 346aa    MW: 38216.6 Da    PI: 10.0992
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540724.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind405.37.8e-12413421300
          GAGA_bind   1 mdddgsre.rnkg.yyepaaslkenlglqlmssia.erdaki...........rernlalsekkaavaerd..................... 57 
                        mddd+s++ r +g ++e+    ++nlglqlmss++ +rd+k+           +++++  +++++++++rd                     
  KN540724.1_FGP002   1 MDDDASMSiR-WGgFFESP---ARNLGLQLMSSVPaDRDTKQllsgtpflhhqHQQHV-PHHHHQPHHPRDcgangnanggamppppppate 87 
                        9*******66.777***99...88**********99**************99656666.9******************************** PP

          GAGA_bind  58 ......maflqrdkalae..rnkalverdnkllalllvensla...salpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpi 137
                              m+f+++d++++   +++++++r++k+l++l+v ++++   +++pvg+++++gt++++++qq++epq ++++ + +++ee+++++ i
  KN540724.1_FGP002  88 appsmpMNFVRSDMWMHPqqQQQHHHPREHKVLHNLTVGHGSShiaHHDPVGYGMIPGTHTLQMMQQQTEPQPQPPPPPqQPKEECISSPLI 179
                        ****************9754778999**************9988999***************************99999899********** PP

          GAGA_bind 138 eeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnG 228
                        ee++++++e + +kkrq++++pk+++akk+kk s++++++ ++++a+ +r++ ++k+i++v+ng++lD s++P+PvCsCtGa++qCY+WG+G
  KN540724.1_FGP002 180 EENVPVIDEPPPPKKRQQGRQPKVPRAKKPKK-SAAPREDGAPPNAPaPRRRGPRKNIGMVINGIDLDLSRIPTPVCSCTGAPQQCYRWGAG 270
                        ********************************.88999*******999******************************************** PP

          GAGA_bind 229 GWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
                        GWqSaCCtttiS+yPLP+stkrrgaRiagrKmS+gafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvti
  KN540724.1_FGP002 271 GWQSACCTTTISTYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTI 342
                        ***********************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.9E-1971343IPR010409GAGA-binding transcriptional activator
PfamPF062172.9E-1181342IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDDDASMSIR WGGFFESPAR NLGLQLMSSV PADRDTKQLL SGTPFLHHQH QQHVPHHHHQ  60
PHHPRDCGAN GNANGGAMPP PPPPATEAPP SMPMNFVRSD MWMHPQQQQQ HHHPREHKVL  120
HNLTVGHGSS HIAHHDPVGY GMIPGTHTLQ MMQQQTEPQP QPPPPPQQPK EECISSPLIE  180
ENVPVIDEPP PPKKRQQGRQ PKVPRAKKPK KSAAPREDGA PPNAPAPRRR GPRKNIGMVI  240
NGIDLDLSRI PTPVCSCTGA PQQCYRWGAG GWQSACCTTT ISTYPLPMST KRRGARIAGR  300
KMSHGAFKKV LEKLAGEGYN LNNPIDLKTF WAKHGTNKFV TISCLV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540724.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612725.10.0barley B recombinant-like protein A isoform X1
RefseqXP_015612727.10.0barley B recombinant-like protein A isoform X1
RefseqXP_015612730.10.0barley B recombinant-like protein B isoform X1
RefseqXP_015612731.10.0barley B recombinant-like protein B isoform X1
SwissprotP0DH880.0BBRA_ORYSJ; Barley B recombinant-like protein A
SwissprotP0DH890.0BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBLA0A0E0B7680.0A0A0E0B768_9ORYZ; Uncharacterized protein
STRINGOGLUM10G00620.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.33e-59basic pentacysteine 2
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]