 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
KN540678.1_FGP002 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C2H2 |
| Protein Properties |
Length: 416aa MW: 44745.6 Da PI: 8.5112 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KN540678.1_FGP002 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15.5 | 5.1e-05 | 309 | 331 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C +Cg++Fs+ L H+++H
KN540678.1_FGP002 309 YECRKCGTMFSSGQALGGHMKSH 331
99*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 416 aa
Download sequence Send
to blast |
MAPSRISSLE SERPVGSYRF HIPRQPPRIQ AEGGKRHMII GDRRHGGTAL WRRGSMLPPS 60
LPRWGVEDGH GHVDGSSRQH PLELGSSSAL SVPIGGWIWR SAAAQARGEV IDGGRCEDEA 120
GDHMQPPPAS SASMVMLSEE RISASGIVVR EQQLHGYGEG PFLPCLAPMA AKGTAREIST 180
KKIAKKDHGE VGDLTMAMLM PSWTSTGNHS SRNPTRCLEQ LPEPSKRAHS EAYGNMQLAT 240
GDLIVGLHKQ ATITVPPPNI SEIGGHLTAH NNNEMTMGKG VQHTIDVSVA KEATCSLVSS 300
ARHCKRGPYE CRKCGTMFSS GQALGGHMKS HNSDERWSDK RVPSAFVGSF LSLITPIDVS 360
NVSVPSSRNP HTSSIPNKEE GRVLVMGAAP LNGVPKGSFR LFGENIAEAP KEEPME
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK242186 | 0.0 | AK242186.1 Oryza sativa Japonica Group cDNA, clone: J075161K18, full insert sequence. |
