PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540596.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 464aa    MW: 51329.8 Da    PI: 8.4929
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540596.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.2e-07172193223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        +C+ C+k+Fs++ +L+ H+++H
  KN540596.1_FGP004 172 QCQMCSKVFSTSGSLREHMMMH 193
                        7*******************99 PP
2zf-C2H2163.4e-05376398123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ CgksF +   L  H+r+H
  KN540596.1_FGP004 376 HRCNTCGKSFGSGQALGGHMRRH 398
                        79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.57111133IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-9111135IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058111140IPR007087Zinc finger, C2H2
PROSITE patternPS000280112133IPR007087Zinc finger, C2H2
SMARTSM003553.3E-4171193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.57171198IPR007087Zinc finger, C2H2
PfamPF138946.0E-4172193No hitNo description
SuperFamilySSF576673.61E-10172193No hitNo description
Gene3DG3DSA:3.30.160.604.9E-7172197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
SuperFamilySSF576673.61E-10371398No hitNo description
SMARTSM003550.0079376398IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.9E-4376398IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.5E-11376399IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.907376403IPR007087Zinc finger, C2H2
PROSITE patternPS000280378398IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MNLAQRRVQI HRPRRPISTL AGHTLSPRAL RLQPEKRPPV GVAERSKRPP PDSYAELDLV  60
GGIERSSRVF PRAIRTHAPP ACSASIFSTR IGETRIRKHP DMAPRGKPWK HCCNKCDKSF  120
RSGNALGGHM SCHRSVGNQP KSTSSPPTVV DLRMPLLSSC DDNLLLLPPE TQCQMCSKVF  180
STSGSLREHM MMHGGEKVVV KAEEEAAGLI EALGIADSMQ DVMVFSSVKR KRSFRSKRQT  240
PALSLEEIEA ADALLLLSGC FDKTSAYEDC YLGDIEESSL GSIALTEVNM NALDRCLIRS  300
VDSKKPINDN NSGYKDCYGQ SDKENCLTVP KEEMDLNDFD HELVRDAALR KPRTDNLDEE  360
MKFGDLPAAA MKDNSHRCNT CGKSFGSGQA LGGHMRRHYV RKCNHHRGVA DRAGSVLMKV  420
QKLKLRLDPI LFDVTLPALT DGDCCISVGV KPEPQLWCVT SNLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540596.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021410.0AK102141.1 Oryza sativa Japonica Group cDNA clone:J033085L23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619008.10.0uncharacterized protein LOC4352630 isoform X1
TrEMBLA0A0N7KU960.0A0A0N7KU96_ORYSJ; Os12g0578800 protein (Fragment)
STRINGOS12T0578800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.12e-07zinc-finger protein 3