PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540567.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 339aa    MW: 36934.4 Da    PI: 4.3223
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540567.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.81.9e-18171432126
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgk.....rknr.atksgyW 83 
                        p G+ F P+ e+l+ +yL++ ++g+++e+  ++++e+d+y ++P +L +   ++ ++ k+wyf + ++ k  +g      r nr +   g+W
  KN540567.1_FGP004  17 PSGYFFVPKPEQLIRDYLNHWITGRPIEElRDIVREADVYGSDPATLTEahkAYGHDGKSWYFLTVAKWKGGRGGagtagRLNRcVEGGGTW 108
                        89************************87725569999**********8423344447779****999999884434445599**666699** PP

                NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                        +++ + + +        g ++ + +   rap  +ktdW+m+e 
  KN540567.1_FGP004 109 HNSQRRRVIEG-----YGDRQAFEY---RAPGNKKTDWLMEEI 143
                        *9988666654.....899999998...599999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-2114165IPR003441NAC domain
PROSITE profilePS5100521.86516165IPR003441NAC domain
PfamPF023651.9E-1017142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAEEDYKKHK GPDVTVPSGY FFVPKPEQLI RDYLNHWITG RPIEELRDIV READVYGSDP  60
ATLTEAHKAY GHDGKSWYFL TVAKWKGGRG GAGTAGRLNR CVEGGGTWHN SQRRRVIEGY  120
GDRQAFEYRA PGNKKTDWLM EEIASNLPAA ITDEGIMVIC KVYLSPRAKE ATADEEERQE  180
TNVPDVGCSY SGGGETSQAT ASMDNCCSTT THTADDTANA AYYYGDIKPE DYDGGDYGIG  240
INADGELVLC GNGHGGIGTQ GQMPLAMQNT NGEMTLFSPM NGYGVGFNEE VRQEPQVEGE  300
VDMNDFFNDL FVDFDGAGDP NPNPNPNGGG DSHGHILCE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540567.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664975.15e-71PREDICTED: NAC domain-containing protein 76-like, partial
TrEMBLA0A0D3HR680.0A0A0D3HR68_9ORYZ; Uncharacterized protein
STRINGOBART12G02170.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.13e-11NAC family protein