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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540502.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 162aa MW: 18434.1 Da PI: 9.3478 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 52 | 2.4e-16 | 17 | 103 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHe 88 +fY++YA+++GF+++ks+++ks r+ +C++egk+ ++ + +++r+++++++gCka +k++ ++ + + + +el+HnH+ KN540502.1_FGP001 17 NFYKTYAYHAGFDIKKSRTHKS-------IREVCCTREGKHVSKVAD-CDRERKKPSKKMGCKAYVKLRHNYdggvLSSVQYDVVELQHNHP 100 6*****************9999.......6889**********9999.899999*****************953222234455677****** PP FAR1 89 lap 91 lap KN540502.1_FGP001 101 LAP 103 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-11 | 17 | 103 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MVPTKGMAFP TYDDPYNFYK TYAYHAGFDI KKSRTHKSIR EVCCTREGKH VSKVADCDRE 60 RKKPSKKMGC KAYVKLRHNY DGGVLSSVQY DVVELQHNHP LAPSPSAVKH MRAHKNHDDT 120 AMKIVDTMQE SHVPQSCIMG VLSDLHGGLD KIPFTTRDVE NR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540502.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005468 | 0.0 | AP005468.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0020P04. | |||
GenBank | AP005773 | 0.0 | AP005773.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0085C03. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882211.1 | 1e-113 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0P0WXC7 | 1e-111 | A0A0P0WXC7_ORYSJ; Os06g0517100 protein | ||||
STRING | ORGLA03G0393200.1 | 2e-88 | (Oryza glaberrima) | ||||
STRING | ORGLA10G0024000.1 | 1e-88 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7609 | 10 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-14 | FAR1-related sequence 5 |