PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 78aa MW: 8449.07 Da PI: 5.8307

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540486.1_FGP003	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.3e-07	4	51	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT + + + a + +G + +W+ +ar +g g+t+ + k ++ k+ KN540486.1_FGP003 4 SWTLDQNKVFELALATYGEDtpdRWENVARAVGGGKTADDAKRHYKKL 51 7********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.3E-4	1	54	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.423	1	52	IPR017877	Myb-like domain
SuperFamily	SSF46689	4.32E-11	3	59	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 78 aa Download sequence Send to blast
MGSSWTLDQN KVFELALATY GEDTPDRWEN VARAVGGGKT ADDAKRHYKK LENDIGRIDS 60 TGASSSNSNG RSSSEGQR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	9e-16	2	67	8	72	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540486.1_FGP003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	1e-127	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641383.1	2e-50	protein RADIALIS-like 1
Swissprot	F4JVB8	4e-19	RADL1_ARATH; Protein RADIALIS-like 1
TrEMBL	B8B2D5	1e-49	B8B2D5_ORYSI; Uncharacterized protein
STRING	ORUFI06G15630.1	4e-49	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP270	38	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.1	2e-19	RAD-like 6

Publications ? help Back to Top
Zhang M, et al. ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development. Plant Physiol., 2013. 163(2): p. 713-20 [PMID:23922269]