PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540429.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 358aa    MW: 39542 Da    PI: 9.0773
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540429.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016266288123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C  Cgk+  + s L  H+++H
  KN540429.1_FGP005 266 HECRLCGKVLASGSALGGHMKSH 288
                        78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64835IPR007087Zinc finger, C2H2
SuperFamilySSF576675.06E-7830No hitNo description
SMARTSM0035510830IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-61030IPR007087Zinc finger, C2H2
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
SuperFamilySSF576675.06E-790117No hitNo description
PfamPF139120.01695117IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.01495124IPR007087Zinc finger, C2H2
SMARTSM003553.495117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097119IPR007087Zinc finger, C2H2
PfamPF139124.9E-8266289IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723266289IPR007087Zinc finger, C2H2
SMARTSM003550.14266288IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280268288IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAQAEKQRWC KLCNKSFPSY CSLGGHMNLH STRRRKKKPP PPPPSPRKAP PITGASGSRY  60
DFRERRRQRP VAPQSQPEPD HASSDDEPWT LAPKTECQLC FKAFHSCDAL SMHMKAHGHH  120
GRKMVMVEQR ASRKPSSAFC RVDDDGGHGF AAVSYAHCKR ARSKRIRMDV FPTPVVVVTH  180
GTEVVDAACI LVMLSKDAYK GSDSLDEDPQ LDGSLDCGPQ KTEMEPSSYR LGVTGDTELI  240
KPENSSSYEE IKFGSLSNVL KATAIHECRL CGKVLASGSA LGGHMKSHSV PAHKKVATFP  300
KTSVTPSRKQ LLEVQNELHE LNLPALSNRD CSSTRAESEL NPWWVASSIQ SERMMGVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338RRKKKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540429.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1096010.0AC109601.9 Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629985.10.0uncharacterized protein LOC107280366
TrEMBLA0A0D3FL490.0A0A0D3FL49_9ORYZ; Uncharacterized protein
STRINGOBART03G25540.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143671921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-07C2H2-like zinc finger protein