PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540394.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 648aa    MW: 71222.5 Da    PI: 6.5562
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540394.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.53.5e-24211260151
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                        kpr++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+ +t+e+v+SHLQ
  KN540394.1_FGP003 211 KPRVVWSVELHRKFVAAVNQL-GIEKAVPKKILDLMNVENITRENVASHLQ 260
                        79*******************.***************************** PP
2Response_reg77.83.9e-26291371109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl vdD+p+ +++l+++l + +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge +++ + +
  KN540394.1_FGP003  29 VLAVDDDPVCLKVLETLLLRCQY-HVTTTGQAATALKLLRENKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMKGI 118
                        799********************.***************888889*******************87754.558******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga d+l Kp+  e+l++
  KN540394.1_FGP003 119 THGACDYLLKPVRLEQLRT 137
                        ****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.42E-3526149IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.4E-4226166No hitNo description
SMARTSM004482.7E-3227139IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.87728143IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.8E-2329138IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.57E-2730143No hitNo description
SuperFamilySSF466896.81E-16208265IPR009057Homeodomain-like
PROSITE profilePS512949.246208267IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-24209260IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-22211265IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MTVEERQGRV GGHGVSGGGR DQFPVGMRVL AVDDDPVCLK VLETLLLRCQ YHVTTTGQAA  60
TALKLLRENK DQFDLVISDV HMPDMDGFKL LELVGLEMDL PVIMLSANGE TQTVMKGITH  120
GACDYLLKPV RLEQLRTIWQ HVIRRKNCDA KNRGNDDDAG QKAQGMNNEG ENIGANRNKR  180
QSRKSRDENG DEGDDSDENS NENGDSSTQK KPRVVWSVEL HRKFVAAVNQ LGIEKAVPKK  240
ILDLMNVENI TRENVASHLQ YLYEKQNITF MFSYHFPSIL ICAIKYRLYL KRLSTDASRQ  300
ANLAAAFGGR NPAYINMNSF GNYNAYGRYR TVPTAGHTQA NNILTRMNSP SAFGVHGLLH  360
SQPIQLGHAQ NNLSTSLNDL GGLNNGNMIR GAQMSTILTG PSGNSFPNIS NGAPLATANR  420
SLQPLESSNQ QHLSRVHSSS ADPFSTLVGE SPQFPDLGRT TNTWQTAVPS NIQDRGHNDS  480
MSQATLHMNG PKIEPVSSFT SSNQIPLLGN EMQGQVASLA SNVPISFNQE ASPFNYGSST  540
NSRDMLNNSH VFSNSSINTS LPNLSLDNPA VPRQTLDRGN TGIVSPMQDG RIHHQVVSNQ  600
LNYNDDLMRT TGLQRGLSGG LDDIVVDMFR PDREDDGVPY IDGDWELV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-22207260154ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540394.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1005300.0AK100530.1 Oryza sativa Japonica Group cDNA clone:J023101H04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626716.10.0two-component response regulator ORR24
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A0D3F1L60.0A0A0D3F1L6_9ORYZ; Two-component response regulator
TrEMBLA0A0E0NAT20.0A0A0E0NAT2_ORYRU; Two-component response regulator
TrEMBLI1NXW90.0I1NXW9_ORYGL; Two-component response regulator
STRINGOS02T0182100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-106response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]