PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540393.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 436aa    MW: 47381.6 Da    PI: 5.1705
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540393.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like452.4e-145411855
            G2-like 18 veqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       v+ L G+e AtPk+i++lm+ kg++++hvkSHLQ++R 
  KN540393.1_FGP003  5 VRVLTGPE-ATPKRIMQLMGAKGVSISHVKSHLQMFRN 41
                       67788887.****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015571.6E-9541IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-11642IPR009057Homeodomain-like
SuperFamilySSF545935.46E-67170415IPR029068Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Gene3DG3DSA:3.10.180.101.8E-73206416IPR029068Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
CDDcd072501.34E-78208420No hitNo description
PfamPF009034.3E-7211367IPR004360Glyoxalase/fosfomycin resistance/dioxygenase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010189Biological Processvitamin E biosynthetic process
GO:0010236Biological Processplastoquinone biosynthetic process
GO:0016117Biological Processcarotenoid biosynthetic process
GO:0005739Cellular Componentmitochondrion
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003868Molecular Function4-hydroxyphenylpyruvate dioxygenase activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MHAGVRVLTG PEATPKRIMQ LMGAKGVSIS HVKSHLQMFR NSNNSSNVNR RHPVTPQIDW  60
TTTAQQDEQQ RRQMSSFSFL ATRTVPAAGI GSHSHQRPHR RQALHAGDDD GCELTLSISG  120
GAAEESKDGG SSITDDDDEL LIQPPAPNII NDDGSTRHAH STAFHMSIET ELYGDVVLRF  180
VSHPDGADAP FLPGFDGVSN PGAVDYGLRR FDHVVGNVPE LAPVAAYISG FTGFHEFAEF  240
TAEDVGTAES GLNSVVLANN AETVLLPLNE PVHGTKRRSQ IQTYLDHHGG PGVQHIALAS  300
DDVLGTLREM RAHSAMGGFE FLAPPPPNYY DGVRRRAGDV LSEEQINECQ ELGVLVDRDD  360
QGVLLQIFTK PVGDRPTFFL EMIQRIGCME KDESGQEYQK GGCGGFGKGN FSELFKSIEE  420
YEKSLEAKQA PTVQGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1sp8_A1e-1561694291574184-Hydroxyphenylpyruvate Dioxygenase
1sp8_B1e-1561694291574184-Hydroxyphenylpyruvate Dioxygenase
1sp8_C1e-1561694291574184-Hydroxyphenylpyruvate Dioxygenase
1sp8_D1e-1561694291574184-Hydroxyphenylpyruvate Dioxygenase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540393.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0588900.0AK058890.1 Oryza sativa Japonica Group cDNA clone:001-007-D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626163.10.04-hydroxyphenylpyruvate dioxygenase
SwissprotO486041e-161HPPD_HORVU; 4-hydroxyphenylpyruvate dioxygenase
TrEMBLA3A3J10.0A3A3J1_ORYSJ; 4-hydroxyphenylpyruvate dioxygenase
STRINGORUFI02G05290.10.0(Oryza rufipogon)
STRINGONIVA02G05420.10.0(Oryza nivara)
STRINGORGLA02G0047600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP598722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.11e-07G2-like family protein