PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540355.1_FGP002

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 258aa MW: 28765.3 Da PI: 5.1647

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540355.1_FGP002	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.4	3.9e-11	183	223	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rRR+riN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq KN540355.1_FGP002 183 KRRRERINERLRILQQLVPNG-----TKVDISTMLEEAVQYVKFLQ 223 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.7E-13	173	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.212	173	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-14	175	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.3E-11	179	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.93E-12	182	227	No hit	No description
Pfam	PF00010	2.0E-8	183	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDARCANIWS PADARSEESE MIDQLKSMFW SGTDAEINFY SPDSSVNSCV TTSTMPSSLF 60 LPLMDDEGFG TVPLMVSTGM DMCADHQHQV ITGNKRMFPM DEHFEQQQKK PKKKTRTSRS 120 VSSSSTITDY ETSSELVNPS CSSGSSVGED SIAATDGSVV LKKSGNSRGH KQCSKDTQSL 180 YAKRRRERIN ERLRILQQLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS SDDTWMFAPL 240 AYNGMNMDLG HTLAENQE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540355.1_FGP002

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC118346	0.0	AC118346.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0039F06, complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015697725.1	1e-135	PREDICTED: transcription factor bHLH139-like
Swissprot	Q84WK0	5e-43	BH085_ARATH; Transcription factor bHLH85
TrEMBL	A0A0E0BLG7	0.0	A0A0E0BLG7_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0J4L8	0.0	A0A0E0J4L8_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0RBA3	0.0	A0A0E0RBA3_ORYRU; Uncharacterized protein
STRING	OGLUM11G20000.1	0.0	(Oryza glumipatula)
STRING	ORUFI11G22390.1	0.0	(Oryza rufipogon)
STRING	ONIVA11G20620.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14002	25	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27740.1	2e-32	root hair defective 6-like 4

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701] Han H, et al. Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution. Planta, 2017. 246(5): p. 1019-1028 [PMID:28770336]