PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540326.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 703aa    MW: 80344.2 Da    PI: 6.24
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540326.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.92.1e-1429883194
                       .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                       ++s + tl++++g++W v+l  +k +g+++lt GW +Fv++n L+e +f++F++d+++ f  +v
  KN540326.1_FGP002 29 PSSAKGTLQNSEGKTWPVEL--EKLDGHVFLTIGWAKFVEDNSLREYEFLLFRYDDNMHF--MV 88
                       3677889*************..********************************998888..55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.196194IPR003340B3 DNA binding domain
SMARTSM010191.3E-4494IPR003340B3 DNA binding domain
SuperFamilySSF1019368.04E-171399IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-112887IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-152996IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-113591No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MALTAKEIPQ GFLIHIPEVD HSTSDASLPS SAKGTLQNSE GKTWPVELEK LDGHVFLTIG  60
WAKFVEDNSL REYEFLLFRY DDNMHFMVLP FGLNACEKVI RSSGSPQGKL PCDIFCCTKR  120
GRDGDRLTEA ANSLTPSHSQ VLQRTTQGHE LISPQSFPDQ HEVCSSKDGL DEHLSLNGPM  180
ENDKANAIAE VMSILDVDKV TVELFCAMLV FYKWNVDAVA EDFDICRGKP QIQNLFLKHK  240
LHFQFDIVKR KLRKFFPPDD YCSSPILESR KCSLEEPKLS NQPLQCDLTT EKCRLVDEHD  300
LCNFSQKKRR KRGSFCSPET PRRSPRLARQ NNAHDSAENT LKERSEERQP SAASMIDQAE  360
SRSEQACLCH DKTDSGSLFQ DSKKVKPAHG EVDLCEEPQH NQGENEGNLD QVNNKETDEE  420
QIERNAVETS ESFTRRGCIK SSPASCEVPA CLRKNELSLT WKHAEHVNPL EKVLLDIQRD  480
NFMKTISHVQ GIIRNHPSDL LTADVITVVV QKEILKWDCC LKDRDAQRIV NALLEHARKI  540
KEMHNFNSEM RKEEFSAKLK VHLKWQLKEV ETAYTSLELD YKKATSDDNI AFSMLHDKKK  600
KLHNLQDEIT GLQQSLEMKK DEMQKLAHQV AKHESVFQKS LMERLRIKEV MKGYEQTLAE  660
VKVQLTSTEV GSIDIEALVK LEMDNMTKEI ELSKESLLNI TFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306310KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540326.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2430920.0AK243092.1 Oryza sativa Japonica Group cDNA, clone: J100023B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614209.10.0B3 domain-containing protein Os03g0120900
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA2WUM30.0A2WUM3_ORYSI; Uncharacterized protein
TrEMBLA2ZXE30.0A2ZXE3_ORYSJ; Uncharacterized protein
STRINGOGLUM01G33420.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.13e-12B3 family protein