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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540220.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 250aa MW: 27032.9 Da PI: 5.6696 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.9 | 4.2e-14 | 76 | 126 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ah ++Er+RR+++N+ ++ Lr+l+P + k+ + a+i +v+YIk+Lq KN540220.1_FGP002 76 KTAHIAVERNRRKQMNENLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 126 689*************************9...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.513 | 74 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.3E-16 | 76 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-14 | 76 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.28E-14 | 76 | 130 | No hit | No description |
Pfam | PF00010 | 3.1E-11 | 76 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-10 | 80 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGDALCDQLL LVDSDGGEFI PHHADADADD LFAILETWED CGNVVGGSAP ATTTTLGSPI 60 AAAACISGVV VATTPKTAHI AVERNRRKQM NENLAVLRSL MPCFYVKRGD QASIIGGVVD 120 YIKELQQVLH SLEAKKQRKV YTDQVEFAGA NLVLKTVSQR SPGQAVKIIA ALEGRSLEIL 180 HAKISTVDDT AVNSFTVKSN DLRVISGQSS NSKLKVARFL KMERYIFGQI GIECELSAEE 240 LVQVIQQTFT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540220.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287482 | 1e-111 | AK287482.1 Oryza sativa Japonica Group cDNA, clone: J043025B18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882342.1 | 3e-72 | transcription factor SPEECHLESS | ||||
TrEMBL | A0A0E0LC63 | 1e-72 | A0A0E0LC63_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G15310.1 | 2e-73 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3484 | 35 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06120.1 | 2e-41 | bHLH family protein |