PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540207.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1318aa    MW: 150846 Da    PI: 9.0355
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540207.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.7e-151292031898
                        --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +p kfa+ + g+   s  ++le ++g++++v++   k +++ vl++GW  F+++ +Lk++D++vF+++g+s+f  +v++f+
  KN540207.1_FGP004 129 VPTKFANIIRGQ--ISGVVKLEVPNGKTYDVQV--AKEQNELVLRSGWGAFARDYELKQRDILVFTYSGSSRF--KVRIFN 203
                        799999666666..5668***************..*********************************99999..999987 PP
2B3512.6e-16265355198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        ff v++    +++  l++pk fa++ +g    s   +le ++g++++v++   k  ++ v+++GW+ F++a +L++gD++vF ++g+s f  
  KN540207.1_FGP004 265 FFVVMMDVGDFQKE-LTIPKMFAKNVQGL--ISGVAKLEVPDGKTYDVEI--AKEHNELVFRSGWEVFASAYELEQGDILVFGYSGNSHF-- 349
                        67777777777776.********888544..45589**************..**********************************9999.. PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                        +v++f+
  KN540207.1_FGP004 350 KVQIFN 355
                        999986 PP
3B359.17.6e-19408499199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        ffkv+++ +  k   l +pkkfa++  gk   + +++le ++g+ ++v++  +  +++ vl++GW +F++a +Lk gD +vF ++g+s f  
  KN540207.1_FGP004 408 FFKVMMSVSDIKDE-LAIPKKFAANVRGK--IPEQVRLEVSDGKIYNVQV--TEEQDELVLRSGWANFASAYQLKHGDLLVFIHSGHSHF-- 492
                        99***999999987.********888666..3446***************..********************************999999.. PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                        +v +f+ 
  KN540207.1_FGP004 493 KVLIFDP 499
                        9999885 PP
4B336.67.9e-126247051092
                        HHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
                 B3  10 vlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                        + +sg lv++k++a ++ ++  +++t++l ++ g ++W++ l  + + +  y l++GW +F + n L+egD++vF+ +++ ++  l
  KN540207.1_FGP004 624 SVASGSLVFSKDYAVRYLLD--QNRTIKLCQSGGsKTWDISL--DMGTDDlYALSTGWLDFFRGNLLQEGDICVFEASKSkRGVAL 705
                        456788***********888..4558888887777*******..8888888*************************8876444444 PP
5B357.62.2e-18889976197
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+kv+     +k+g +++p kfa+++gg+   s t++le+++g+++ev++   k  +  vl++GW++F++a +L+ gD++vF  +g+s f  
  KN540207.1_FGP004 889 FIKVM--ITDFKNG-VTIPAKFARNFGGQM--SGTVKLETRNGKTYEVQV--AKELNNLVLRSGWERFASAYELEKGDILVFIQSGNSHF-- 971
                        67777..6678887.********9999994..559***************..*******************************8888888.. PP

                        EEEEE CS
                 B3  93 vvkvf 97 
                        +v ++
  KN540207.1_FGP004 972 KVWIY 976
                        66665 PP
6B339.69e-131229131513100
                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-SS CS
                 B3   13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrks 100 
                         s+ ++++ k+a+++  + e++ +++   +  +s++ k  ++ + + + l++GW +Fv++n++k gD+++F+l+++ ++  ++v+++rks
  KN540207.1_FGP004 1229 SRYMCFSAKYAAKYL-PRENN-KIMRLRLPKKSYKYKAVFKINNKVHKLGGGWGKFVDDNKIKLGDICLFQLMKNkKKLMMMVHIIRKS 1315
                         556788889999993.33334.455555566777777777999999***************************999*********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-18117207IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.9E-7122205IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-18127207IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.476129205IPR003340B3 DNA binding domain
PfamPF023621.7E-12129203IPR003340B3 DNA binding domain
CDDcd100179.26E-17129203No hitNo description
Gene3DG3DSA:2.40.330.102.1E-20262357IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-19263356IPR015300DNA-binding pseudobarrel domain
CDDcd100173.34E-19263355No hitNo description
PROSITE profilePS5086312.379264357IPR003340B3 DNA binding domain
PfamPF023621.9E-14265355IPR003340B3 DNA binding domain
SMARTSM010191.8E-9266357IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-22401501IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-22403501IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-18406498No hitNo description
PROSITE profilePS5086312.915407500IPR003340B3 DNA binding domain
SMARTSM010195.4E-12408500IPR003340B3 DNA binding domain
PfamPF023624.4E-16408498IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-14608712IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-15609713IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-10614711No hitNo description
PROSITE profilePS5086311.223615713IPR003340B3 DNA binding domain
SMARTSM010195.1E-5617713IPR003340B3 DNA binding domain
PfamPF023624.6E-9624705IPR003340B3 DNA binding domain
SuperFamilySSF1019361.24E-21883981IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-21885981IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.084886979IPR003340B3 DNA binding domain
CDDcd100171.68E-19887977No hitNo description
SMARTSM010191.4E-15889979IPR003340B3 DNA binding domain
PfamPF023622.6E-16889975IPR003340B3 DNA binding domain
SuperFamilySSF1019369.61E-1210921172IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.8E-1110921173IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-610971172No hitNo description
SMARTSM010190.03310981194IPR003340B3 DNA binding domain
PROSITE profilePS508639.78410981194IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-1612081315IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-1912091315IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-1212141296No hitNo description
SMARTSM010192.6E-512161315IPR003340B3 DNA binding domain
PROSITE profilePS508639.93912171315IPR003340B3 DNA binding domain
PfamPF023623.9E-1112281314IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1318 aa     Download sequence    Send to blast
MGYNAPKDIF SFKFYVQYSQ VQEVWCFGVP FPIYVPREDS HKYRTHRHCG CFPAEASSIS  60
LQYFQRNNHR MRKSFTTCKE CIFYHYWNHM GDQKRSFINV MIGDFVPIGL DEVHSKLDVG  120
LIWLSLQAVP TKFANIIRGQ ISGVVKLEVP NGKTYDVQVA KEQNELVLRS GWGAFARDYE  180
LKQRDILVFT YSGSSRFKVR IFNPSGCEKE LSCVMMNNTP CSHEWSMSYH DYHVQSPSES  240
GSMSHTVCME CTASCYWHNM NKRRFFVVMM DVGDFQKELT IPKMFAKNVQ GLISGVAKLE  300
VPDGKTYDVE IAKEHNELVF RSGWEVFASA YELEQGDILV FGYSGNSHFK VQIFNPRASL  360
MITIDNHPEL QKGKHGKCGY RMNKSGTTCM DCITNHYWLH MDDRERYFFK VMMSVSDIKD  420
ELAIPKKFAA NVRGKIPEQV RLEVSDGKIY NVQVTEEQDE LVLRSGWANF ASAYQLKHGD  480
LLVFIHSGHS HFKVLIFDPS CTEKEFSCVV TDSTSHVHER SISHDNHLQS PRSEILGKNY  540
SLCSSRKRSR MNPADYPSQR PDVLSSEDIK DPMSSGGLQK SKMSRYVLPM LYNMTSAQEA  600
EVLALEKKIQ PQIPLYITAM DRTSVASGSL VFSKDYAVRY LLDQNRTIKL CQSGGSKTWD  660
ISLDMGTDDL YALSTGWLDF FRGNLLQEGD ICVFEASKSK RGVALTFHPF KESHCPKSSE  720
YTLSTKSPTR RVPKRDYFAT NLTNLTDQQE RKLRLLDPKP RSGNLKLDDD LEIECLNNFD  780
LKKHHQTVSI SKGPGLLADS HQPEMQKDLV KDTNAVHTTI RMDFQVYIYC RCLDMVALWL  840
AASALLKHGK LALRADWQSG HRMEKSHRVC KNCVANHYWL HMDNHGKSFI KVMITDFKNG  900
VTIPAKFARN FGGQMSGTVK LETRNGKTYE VQVAKELNNL VLRSGWERFA SAYELEKGDI  960
LVFIQSGNSH FKVWIYDPSA CEKELPCIIT EQLPRVQQRS ISHDNHTRLK RNAKSAKLYV  1020
DSSGHTKETS EINPASSPSW KPTERVPSSE ELDEPVDLAN VQKATKSFYS LPRMCNMTSA  1080
QKAEVDALEK RIKPQIPFYI TVMDKTSATD GLLAISKDYA VSYLLDKNET IKLCHSGRSM  1140
TWDISLDIDT DDQYALSTGW LDFIRNNHLQ EGCVPSTKHG VSKPNYIVSR FTTLSGQLKI  1200
KVEAKVQAIQ SEIPIFVAVM RESFIRGRSR YMCFSAKYAA KYLPRENNKI MRLRLPKKSY  1260
KYKAVFKINN KVHKLGGGWG KFVDDNKIKL GDICLFQLMK NKKKLMMMVH IIRKSEFC
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540207.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419930.0AK241993.1 Oryza sativa Japonica Group cDNA, clone: J075099J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878051.10.0B3 domain-containing protein LOC_Os12g40080
SwissprotQ2QMT60.0Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A0E0FDM50.0A0A0E0FDM5_9ORYZ; Uncharacterized protein
STRINGOMERI12G12100.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-21B3 family protein