PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540195.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 331aa    MW: 34699.7 Da    PI: 4.0358
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540195.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like765.1e-24173222151
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                        k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQ
  KN540195.1_FGP001 173 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQ 222
                        6799*****************.****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.233170229IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-23171222IPR009057Homeodomain-like
SuperFamilySSF466894.66E-15171222IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-23173222IPR006447Myb domain, plants
PfamPF002492.1E-6176222IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MCPDIEDRAA VAGDAGMEVV GMSSDDMDQF DFSVDDIDFG DFFLRLEDGD VLPDLEVDPA  60
EIFTDLEAIK TSGGEGVQDQ EVPTVELLAP ADDVGVLDPC GDVVVGEENA AFAGAGEEKG  120
GCNQDDDAGE ANADDGAAAV EAKSSSPSST TSSSQEAESR HKSSSKSSHG KKKAKVDWTP  180
ELHRRFVQAV EQLGIDKAVP SRILEIMGID SLTRHNIASH LQGPAHVPTQ GTPCMAMPMP  240
AARFPAPPVP GVVPCPMYRP LTPPALASKN QQDAQLQLQV QPSSESIDAA IGDVLSKPWL  300
PLPLGLKPPS VDSVMGELQR QGVANVPPAC G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-15170222254ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540195.1_FGP001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3185810.0AF318581.1 Oryza sativa putative transcription factor OsGLK1 (Glk1) mRNA, complete cds.
GenBankAK0651840.0AK065184.1 Oryza sativa Japonica Group cDNA clone:J013002D22, full insert sequence.
GenBankAK0989090.0AK098909.1 Oryza sativa Japonica Group cDNA clone:J013002F22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644244.11e-127probable transcription factor GLK1
SwissprotQ5Z5I41e-128GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLA0A0E0PXK91e-127A0A0E0PXK9_ORYRU; Uncharacterized protein
STRINGORUFI06G15000.11e-127(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44190.13e-22GOLDEN2-like 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]